Variant report

Variant	rs890450
Chromosome Location	chr11:104608631-104608632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1030397	1.00[ASN][1000 genomes]
rs1120720	0.81[AFR][1000 genomes]
rs1147011	1.00[AFR][1000 genomes]
rs1147013	1.00[AFR][1000 genomes]
rs1147016	1.00[AFR][1000 genomes]
rs1147021	1.00[AFR][1000 genomes]
rs1147025	0.87[AFR][1000 genomes]
rs1147026	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1147029	1.00[ASN][1000 genomes]
rs1147048	0.88[AFR][1000 genomes]
rs1200642	0.94[AFR][1000 genomes]
rs1200645	1.00[ASN][1000 genomes]
rs1200654	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1200655	0.94[AFR][1000 genomes]
rs1863577	1.00[ASN][1000 genomes]
rs1893819	1.00[ASN][1000 genomes]
rs1893821	1.00[ASN][1000 genomes]
rs2555138	1.00[ASN][1000 genomes]
rs2555139	1.00[ASN][1000 genomes]
rs2845896	0.94[AFR][1000 genomes]
rs2845899	0.94[AFR][1000 genomes]
rs2845906	0.94[AFR][1000 genomes]
rs2845907	0.94[AFR][1000 genomes]
rs2849199	1.00[AFR][1000 genomes]
rs2850822	1.00[ASN][1000 genomes]
rs2850825	1.00[ASN][1000 genomes]
rs58022066	0.94[AFR][1000 genomes]
rs890449	0.89[AFR][1000 genomes]
rs991272	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104608400-104609200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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