Variant report

Variant	rs2845899
Chromosome Location	chr11:104643952-104643953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1120720	0.87[AFR][1000 genomes]
rs1147011	0.94[AFR][1000 genomes]
rs1147013	0.94[AFR][1000 genomes]
rs1147016	0.94[AFR][1000 genomes]
rs1147021	0.94[AFR][1000 genomes]
rs1147026	0.87[AFR][1000 genomes]
rs1147048	0.94[AFR][1000 genomes]
rs1200642	1.00[AFR][1000 genomes]
rs1200654	0.87[AFR][1000 genomes]
rs1200655	1.00[AFR][1000 genomes]
rs2845896	1.00[AFR][1000 genomes]
rs2845906	1.00[AFR][1000 genomes]
rs2845907	1.00[AFR][1000 genomes]
rs2849199	0.94[AFR][1000 genomes]
rs58022066	0.87[AFR][1000 genomes]
rs890449	0.83[AFR][1000 genomes]
rs890450	0.94[AFR][1000 genomes]
rs991272	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104641400-104644200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:104641400-104644200	Enhancers	HMEC	breast
3	chr11:104641400-104644400	Enhancers	NHEK	skin
4	chr11:104642000-104645200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:104642400-104644000	Enhancers	Fetal Lung	lung
6	chr11:104642400-104644200	Enhancers	Primary T cells from cord blood	blood
7	chr11:104642400-104644200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr11:104642400-104644200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:104642400-104644200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr11:104642400-104644200	Enhancers	NHLF	lung
11	chr11:104642400-104644400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:104642600-104644000	Enhancers	Fetal Stomach	stomach
13	chr11:104642600-104644000	Enhancers	Dnd41	blood
14	chr11:104642600-104644200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:104642600-104644200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr11:104642800-104644000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr11:104642800-104644000	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr11:104643000-104644000	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr11:104643000-104644000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:104643000-104644200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:104643200-104644000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:104643200-104644000	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr11:104643200-104644000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr11:104643200-104644200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:104643200-104644200	Enhancers	HSMMtube	muscle
26	chr11:104643200-104644200	Enhancers	NH-A	brain
27	chr11:104643400-104644000	Enhancers	Brain Hippocampus Middle	brain
28	chr11:104643400-104644000	Enhancers	Fetal Kidney	kidney
29	chr11:104643400-104644200	Enhancers	HSMM	muscle
30	chr11:104643600-104644000	Enhancers	Brain Angular Gyrus	brain
31	chr11:104643600-104644200	Enhancers	Osteobl	bone
32	chr11:104643800-104644000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:104643800-104644000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr11:104643800-104644200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:104643800-104644400	Enhancers	HUVEC	blood vessel
36	chr11:104643800-104644400	Enhancers	NHDF-Ad	bronchial
37	chr11:104643800-104653200	Weak transcription	H9 Cell Line	embryonic stem cell

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