Variant report

Variant	rs890449
Chromosome Location	chr11:104609401-104609402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1147011	0.89[AFR][1000 genomes]
rs1147013	0.89[AFR][1000 genomes]
rs1147016	0.89[AFR][1000 genomes]
rs1147021	0.89[AFR][1000 genomes]
rs1147026	0.83[AFR][1000 genomes]
rs1200642	0.83[AFR][1000 genomes]
rs1200655	0.83[AFR][1000 genomes]
rs12280514	1.00[AMR][1000 genomes]
rs17102725	1.00[AMR][1000 genomes]
rs2845896	0.83[AFR][1000 genomes]
rs2845899	0.83[AFR][1000 genomes]
rs2845906	0.83[AFR][1000 genomes]
rs2845907	0.83[AFR][1000 genomes]
rs2849199	0.89[AFR][1000 genomes]
rs3888096	1.00[AMR][1000 genomes]
rs481367	1.00[AMR][1000 genomes]
rs496540	1.00[AMR][1000 genomes]
rs521752	1.00[AMR][1000 genomes]
rs533867	1.00[AMR][1000 genomes]
rs547913	1.00[AMR][1000 genomes]
rs552761	1.00[AMR][1000 genomes]
rs560646	1.00[AMR][1000 genomes]
rs578500	1.00[AMR][1000 genomes]
rs58022066	0.83[AFR][1000 genomes]
rs594572	1.00[AMR][1000 genomes]
rs644121	1.00[AMR][1000 genomes]
rs644963	1.00[AMR][1000 genomes]
rs890450	0.89[AFR][1000 genomes]
rs991272	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104609000-104609800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:104609000-104609800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:104609000-104609800	Enhancers	Fetal Heart	heart
4	chr11:104609000-104610400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:104609200-104609800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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