Variant report

Variant	rs2555138
Chromosome Location	chr11:104621089-104621090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1030397	1.00[ASN][1000 genomes]
rs1147026	1.00[ASN][1000 genomes]
rs1147029	1.00[ASN][1000 genomes]
rs1200645	1.00[ASN][1000 genomes]
rs1200654	1.00[ASN][1000 genomes]
rs12288890	0.81[AMR][1000 genomes]
rs1863577	1.00[ASN][1000 genomes]
rs1893819	1.00[ASN][1000 genomes]
rs1893821	1.00[ASN][1000 genomes]
rs2555139	1.00[ASN][1000 genomes]
rs2850822	1.00[ASN][1000 genomes]
rs2850825	1.00[ASN][1000 genomes]
rs520458	1.00[CHB][hapmap]
rs521270	1.00[CHB][hapmap]
rs890450	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104616600-104622800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:104620000-104622600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr11:104620200-104621400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:104620200-104621800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:104620400-104622200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:104620600-104622000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr11:104621000-104621400	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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