Variant report

Variant	rs12023065
Chromosome Location	chr1:175775838-175775839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10913078	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10913079	0.91[EUR][1000 genomes]
rs12040251	0.89[EUR][1000 genomes]
rs12142467	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12142588	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1340998	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1359585	0.91[EUR][1000 genomes]
rs1359586	0.91[EUR][1000 genomes]
rs1409142	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1575824	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1575825	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925947	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2090977	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2209558	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2222419	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2901984	0.88[AMR][1000 genomes]
rs34010246	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425362	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6656072	0.84[EUR][1000 genomes]
rs6667697	0.80[EUR][1000 genomes]
rs6667913	0.80[EUR][1000 genomes]
rs7535559	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7537684	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537751	0.80[EUR][1000 genomes]
rs7544599	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7544686	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7547063	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs860895	0.82[ASN][1000 genomes]
rs942958	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959850	0.80[AMR][1000 genomes]
rs990707	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831959	chr1:175576384-175776729	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175773600-175779000	Weak transcription	Pancreas	Pancrea
2	chr1:175773800-175777600	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:175774000-175776600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:175774000-175778200	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:175775600-175777000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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