Variant report

Variant	rs942958
Chromosome Location	chr1:175771306-175771307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10913078	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10913079	0.95[EUR][1000 genomes]
rs12023065	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12040251	0.92[EUR][1000 genomes]
rs12142467	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12142588	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1340998	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1359585	0.95[EUR][1000 genomes]
rs1359586	0.95[EUR][1000 genomes]
rs1409142	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1575824	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1575825	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925947	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2090977	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2209558	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2222419	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2901984	0.88[AMR][1000 genomes]
rs34010246	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425362	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6656072	0.81[EUR][1000 genomes]
rs6667697	0.84[EUR][1000 genomes]
rs6667913	0.84[EUR][1000 genomes]
rs7535559	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7537684	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537751	0.84[EUR][1000 genomes]
rs7544599	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7544686	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7547063	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs860895	0.82[ASN][1000 genomes]
rs959850	0.80[AMR][1000 genomes]
rs990707	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548245	chr1:175430855-175772378	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv831959	chr1:175576384-175776729	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175767600-175772400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:175769400-175772600	Enhancers	Fetal Muscle Leg	muscle
3	chr1:175770000-175772600	Enhancers	Pancreas	Pancrea
4	chr1:175770600-175774200	Enhancers	Fetal Heart	heart
5	chr1:175771200-175772400	Enhancers	Fetal Muscle Trunk	muscle
6	chr1:175771200-175772400	Enhancers	Left Ventricle	heart

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