Variant report

Variant	rs2901984
Chromosome Location	chr1:175777467-175777468
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10913078	0.81[AMR][1000 genomes]
rs12023065	0.88[AMR][1000 genomes]
rs12142467	0.86[AMR][1000 genomes]
rs1409142	0.82[AMR][1000 genomes]
rs1575825	0.88[AMR][1000 genomes]
rs34010246	0.88[AMR][1000 genomes]
rs7535559	0.88[AMR][1000 genomes]
rs7537684	0.88[AMR][1000 genomes]
rs7544599	0.81[AMR][1000 genomes]
rs7544686	0.81[AMR][1000 genomes]
rs7547063	0.82[AMR][1000 genomes]
rs942958	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175773600-175779000	Weak transcription	Pancreas	Pancrea
2	chr1:175773800-175777600	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:175774000-175778200	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:175777000-175778800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:175777200-175777800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:175777200-175777800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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