Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10493578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10493580	0.88[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs11162070	0.92[EUR][1000 genomes]
rs11162073	0.90[EUR][1000 genomes]
rs11805321	0.88[EUR][1000 genomes]
rs12035171	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12038667	0.86[EUR][1000 genomes]
rs12039427	0.88[EUR][1000 genomes]
rs12040748	0.88[EUR][1000 genomes]
rs12045798	0.87[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2289240	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2289241	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4083965	0.86[JPT][hapmap]
rs4146895	0.85[EUR][1000 genomes]
rs4146896	0.85[EUR][1000 genomes]
rs4949690	0.88[EUR][1000 genomes]
rs58483436	0.82[EUR][1000 genomes]
rs6686341	0.86[JPT][hapmap]
rs6688802	0.86[JPT][hapmap]
rs6703050	0.88[JPT][hapmap]
rs6703053	0.82[JPT][hapmap]
rs6703146	0.88[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes]
rs6704184	0.86[EUR][1000 genomes]
rs7513692	0.86[JPT][hapmap]
rs7517793	0.88[EUR][1000 genomes]
rs7517974	0.88[EUR][1000 genomes]
rs7529565	0.91[EUR][1000 genomes]
rs7550814	0.86[JPT][hapmap]
rs7556623	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76484000-76484400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr1:76484000-76484600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:76484000-76484800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:76484000-76485000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr1:76484200-76484800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:76484200-76484800	Enhancers	Fetal Lung	lung

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