Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10493578	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10493580	0.86[EUR][1000 genomes]
rs11162070	0.86[EUR][1000 genomes]
rs11162073	0.85[EUR][1000 genomes]
rs11805321	0.83[EUR][1000 genomes]
rs12023970	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12035171	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12038667	0.81[EUR][1000 genomes]
rs12039427	0.83[EUR][1000 genomes]
rs12040748	0.83[EUR][1000 genomes]
rs2289240	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2289241	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4146895	0.80[EUR][1000 genomes]
rs4146896	0.80[EUR][1000 genomes]
rs4949690	0.83[EUR][1000 genomes]
rs6703146	0.85[EUR][1000 genomes]
rs6704184	0.81[EUR][1000 genomes]
rs7517793	0.83[EUR][1000 genomes]
rs7517974	0.83[EUR][1000 genomes]
rs7529565	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76479800-76484000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:76479800-76484200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:76481000-76483600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: