Variant report

Variant	rs6703146
Chromosome Location	chr1:76503461-76503462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10493578	0.91[EUR][1000 genomes]
rs10493580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162070	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162073	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11804459	0.87[ASN][1000 genomes]
rs11805321	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12023970	0.91[EUR][1000 genomes]
rs12032833	0.90[ASN][1000 genomes]
rs12032853	0.90[ASN][1000 genomes]
rs12033420	0.90[ASN][1000 genomes]
rs12035171	0.89[EUR][1000 genomes]
rs12038667	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12039427	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12040748	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12040836	0.90[ASN][1000 genomes]
rs12045798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12568806	0.81[EUR][1000 genomes]
rs1370714	0.90[ASN][1000 genomes]
rs1417407	0.81[EUR][1000 genomes]
rs17599859	0.90[ASN][1000 genomes]
rs1934816	0.89[ASN][1000 genomes]
rs2289240	0.91[EUR][1000 genomes]
rs2289241	0.91[EUR][1000 genomes]
rs291075	0.82[EUR][1000 genomes]
rs4083965	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4146895	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4146896	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4949690	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58483436	0.88[EUR][1000 genomes]
rs61771303	0.90[ASN][1000 genomes]
rs6679705	0.90[ASN][1000 genomes]
rs6685661	0.90[ASN][1000 genomes]
rs6686341	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6688109	0.90[ASN][1000 genomes]
rs6688802	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6692421	0.90[ASN][1000 genomes]
rs6696470	0.90[ASN][1000 genomes]
rs6703050	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6703053	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6704184	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs699830	0.84[EUR][1000 genomes]
rs7513692	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7517793	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517974	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7529565	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7536325	0.90[ASN][1000 genomes]
rs7550814	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7556623	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2754129	chr1:76489579-76529279	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76501800-76503600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr1:76501800-76504200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr1:76501800-76504400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:76502000-76503600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr1:76502200-76507200	Enhancers	Fetal Intestine Large	intestine
6	chr1:76502200-76507400	Enhancers	Fetal Intestine Small	intestine
7	chr1:76502600-76503800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:76502800-76503600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr1:76502800-76504000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:76502800-76504200	Enhancers	Stomach Mucosa	stomach
11	chr1:76503000-76503800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:76503000-76504200	Enhancers	Fetal Stomach	stomach
13	chr1:76503000-76504400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:76503000-76504800	Enhancers	Fetal Kidney	kidney
15	chr1:76503000-76505200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:76503200-76503600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
17	chr1:76503200-76504000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:76503200-76504200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr1:76503200-76504200	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr1:76503200-76504400	Enhancers	Duodenum Mucosa	Duodenum
21	chr1:76503200-76505000	Enhancers	Placenta Amnion	Placenta Amnion
22	chr1:76503400-76504200	Enhancers	Fetal Lung	lung
23	chr1:76503400-76505200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:76503400-76505800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr1:76503400-76505800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr1:76503400-76507000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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