Variant report

Variant	rs12025067
Chromosome Location	chr1:59226787-59226788
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59224677..59227301-chr1:59232724..59235245,3	K562	blood:
2	chr1:59217240..59220622-chr1:59226403..59228329,3	K562	blood:
3	chr1:59224893..59226856-chr1:59228932..59231165,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264081	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10889118	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11207303	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11802053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12021968	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12028847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12127952	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1570480	0.95[ASN][1000 genomes]
rs6684756	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59221200-59228800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:59222200-59227600	Weak transcription	NH-A	brain
3	chr1:59222200-59228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:59222200-59230400	Weak transcription	Lung	lung
5	chr1:59222400-59227600	Weak transcription	Hela-S3	cervix
6	chr1:59222400-59227800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:59222600-59227800	Weak transcription	HSMM	muscle
8	chr1:59222600-59228600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr1:59222800-59227000	Weak transcription	HMEC	breast
10	chr1:59222800-59227400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:59222800-59227600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:59222800-59227800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:59222800-59227800	Weak transcription	NHEK	skin
14	chr1:59222800-59227800	Weak transcription	Osteobl	bone
15	chr1:59222800-59229000	Weak transcription	Right Atrium	heart
16	chr1:59223000-59227400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:59223000-59227400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:59223000-59227600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:59223000-59230200	Weak transcription	Aorta	Aorta
20	chr1:59223200-59227000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:59223200-59227800	Weak transcription	Small Intestine	intestine
22	chr1:59223200-59228600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:59223200-59229600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:59223400-59227400	Weak transcription	NHLF	lung
25	chr1:59223600-59227200	Weak transcription	HUVEC	blood vessel
26	chr1:59224800-59227000	Weak transcription	NHDF-Ad	bronchial
27	chr1:59225200-59227000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:59225600-59227000	Weak transcription	HepG2	liver
29	chr1:59226600-59239000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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