The 2.0 version of rSNPBase

Variant report

Variant rs6684756
Chromosome Location chr1:59219411-59219412
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59206200-59221000 Weak transcription Fetal Intestine Small intestine
2 chr1:59207600-59220000 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:59207800-59220000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:59207800-59220000 Weak transcription Psoas Muscle Psoas
5 chr1:59211600-59221000 Weak transcription Stomach Mucosa stomach
6 chr1:59212000-59220000 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr1:59215200-59221200 Weak transcription Fetal Brain Female brain
8 chr1:59215200-59221200 Weak transcription Fetal Stomach stomach
9 chr1:59215400-59219800 Weak transcription Fetal Brain Male brain
10 chr1:59215400-59221000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
11 chr1:59216800-59220000 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr1:59217600-59221000 Enhancers Primary Natural Killer cells fromperipheralblood blood
13 chr1:59217800-59220800 Enhancers Hela-S3 cervix
14 chr1:59217800-59221000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr1:59218000-59219600 Enhancers Pancreatic Islets Pancreatic Islet
16 chr1:59218000-59220800 Enhancers Dnd41 blood
17 chr1:59218000-59223200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr1:59218200-59219600 Enhancers Pancreas Pancrea
19 chr1:59218200-59220800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr1:59218200-59220800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
21 chr1:59218200-59221000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:59218200-59223000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:59218200-59223200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:59218200-59223800 Enhancers NHDF-Ad bronchial
25 chr1:59218400-59219600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
26 chr1:59218400-59220000 Weak transcription Primary T cells fromperipheralblood blood
27 chr1:59218400-59220800 Enhancers Muscle Satellite Cultured Cells --
28 chr1:59218400-59221000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:59218400-59221800 Enhancers A549 lung
30 chr1:59218400-59222200 Enhancers Cortex derived primary cultured neurospheres brain
31 chr1:59218400-59222800 Enhancers NHEK skin
32 chr1:59218400-59223000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
33 chr1:59218600-59219600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr1:59218600-59220800 Enhancers HSMMtube muscle
35 chr1:59218600-59221000 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr1:59218600-59222400 Enhancers Breast Myoepithelial Primary Cells Breast
37 chr1:59218600-59222400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:59218600-59222800 Enhancers HMEC breast
39 chr1:59218600-59223400 Enhancers NHLF lung
40 chr1:59218800-59220000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr1:59218800-59220200 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr1:59218800-59220800 Enhancers HUVEC blood vessel
43 chr1:59218800-59221000 Weak transcription Brain Inferior Temporal Lobe brain
44 chr1:59218800-59221000 Enhancers NH-A brain
45 chr1:59218800-59222600 Enhancers HSMM muscle
46 chr1:59218800-59223200 Enhancers Fetal Thymus thymus
47 chr1:59219000-59219600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr1:59219000-59219800 Weak transcription Primary hematopoietic stem cells blood
49 chr1:59219000-59219800 Weak transcription Right Atrium heart
50 chr1:59219000-59220000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015