The 2.0 version of rSNPBase

Variant report

Variant rs12026500
Chromosome Location chr1:149945558-149945559
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:149909400-149947000 Weak transcription Fetal Brain Male brain
2 chr1:149922400-149951600 Weak transcription Small Intestine intestine
3 chr1:149929400-149948400 Strong transcription Rectal Mucosa Donor 29 rectum
4 chr1:149929600-149950200 Strong transcription Osteobl bone
5 chr1:149930800-149959000 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr1:149931800-149946200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr1:149931800-149949600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:149931800-149949800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr1:149932000-149949200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr1:149932000-149949600 Strong transcription HUES6 Cell Line embryonic stem cell
11 chr1:149933200-149947000 Strong transcription Fetal Intestine Large intestine
12 chr1:149933200-149949600 Strong transcription HUES64 Cell Line embryonic stem cell
13 chr1:149934200-149958000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr1:149934400-149949600 Strong transcription Fetal Muscle Leg muscle
15 chr1:149934600-149947600 Weak transcription Primary B cells from peripheral blood blood
16 chr1:149934600-149949600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
17 chr1:149934600-149949600 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr1:149935600-149950400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr1:149935800-149947400 Strong transcription Duodenum Mucosa Duodenum
20 chr1:149935800-149948000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr1:149935800-149948200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr1:149935800-149949400 Strong transcription Left Ventricle heart
23 chr1:149936200-149948400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr1:149936400-149947600 Strong transcription NH-A brain
25 chr1:149936400-149949400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr1:149936400-149949600 Strong transcription Breast Myoepithelial Primary Cells Breast
27 chr1:149936600-149948400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr1:149937200-149948400 Strong transcription Muscle Satellite Cultured Cells --
29 chr1:149937200-149949600 Strong transcription Stomach Smooth Muscle stomach
30 chr1:149937400-149948400 Strong transcription Brain Anterior Caudate brain
31 chr1:149937600-149946800 Weak transcription Primary T helper naive cells fromperipheralblood blood
32 chr1:149938000-149950600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr1:149938000-149951000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
34 chr1:149938000-149953000 Weak transcription Thymus Thymus
35 chr1:149938200-149947000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
36 chr1:149938200-149950600 Weak transcription Stomach Mucosa stomach
37 chr1:149938600-149948400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:149939400-149946000 Weak transcription Brain Germinal Matrix brain
39 chr1:149939600-149951600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr1:149939600-149951600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr1:149939600-149953400 Weak transcription iPS-15b Cell Line embryonic stem cell
42 chr1:149939600-149958000 Weak transcription Aorta Aorta
43 chr1:149939800-149949600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr1:149940000-149948200 Strong transcription Brain Hippocampus Middle brain
45 chr1:149940200-149949600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr1:149940600-149948200 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr1:149940800-149945800 Strong transcription Placenta Placenta
48 chr1:149940800-149947800 Strong transcription Skeletal Muscle Male skeletal muscle
49 chr1:149940800-149948200 Strong transcription Primary T cells fromperipheralblood blood
50 chr1:149940800-149948200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015