Variant report

Variant	rs12026681
Chromosome Location	chr1:220375140-220375141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:220374953-220375189	ProgFib	skin:	n/a	n/a

Variant related genes	Relation type
SNORA36B	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10863538	0.88[EUR][1000 genomes]
rs11118507	0.88[EUR][1000 genomes]
rs1397958	0.85[EUR][1000 genomes]
rs1588578	0.88[EUR][1000 genomes]
rs2221833	0.87[EUR][1000 genomes]
rs2667967	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2667968	0.88[EUR][1000 genomes]
rs2667969	0.88[EUR][1000 genomes]
rs2667970	0.88[EUR][1000 genomes]
rs2808008	0.87[EUR][1000 genomes]
rs2808009	0.83[CEU][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs2808011	0.95[CEU][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes]
rs2808012	0.88[EUR][1000 genomes]
rs2808013	0.87[EUR][1000 genomes]
rs2808016	0.88[EUR][1000 genomes]
rs2808018	0.95[CEU][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes]
rs2808019	0.95[CEU][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes]
rs4142940	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4511114	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6541127	0.91[EUR][1000 genomes]
rs6696985	0.88[EUR][1000 genomes]
rs7535619	1.00[CEU][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220305400-220376600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr1:220325000-220398400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:220330800-220378600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:220345400-220391400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:220348000-220386800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:220350000-220386200	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:220350600-220387800	Weak transcription	Stomach Mucosa	stomach
8	chr1:220350800-220378800	Weak transcription	Pancreas	Pancrea
9	chr1:220353200-220386600	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:220353800-220386400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:220354400-220386800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:220355400-220378600	Weak transcription	Gastric	stomach
13	chr1:220358000-220376000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:220358000-220381600	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr1:220358000-220382000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:220358400-220377600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:220358600-220385800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:220359000-220385000	Strong transcription	Liver	Liver
19	chr1:220359200-220386000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:220359400-220376600	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr1:220359400-220377000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:220359400-220385800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:220359400-220386800	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:220359600-220378400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:220360200-220376400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr1:220362800-220378600	Weak transcription	Small Intestine	intestine
27	chr1:220366000-220378600	Weak transcription	Spleen	Spleen
28	chr1:220366200-220378200	Weak transcription	A549	lung
29	chr1:220366200-220378600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:220366200-220392000	Weak transcription	Brain Angular Gyrus	brain
31	chr1:220366400-220378600	Weak transcription	Brain Substantia Nigra	brain
32	chr1:220366400-220379800	Weak transcription	Esophagus	oesophagus
33	chr1:220366600-220378400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr1:220366600-220378400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr1:220366600-220378400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:220366600-220378400	Weak transcription	Hela-S3	cervix
37	chr1:220366600-220378600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr1:220366800-220378400	Weak transcription	Colonic Mucosa	Colon
39	chr1:220366800-220378400	Weak transcription	HepG2	liver
40	chr1:220367000-220378600	Weak transcription	NHLF	lung
41	chr1:220368600-220378400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr1:220368600-220378400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr1:220368600-220378400	Weak transcription	HSMMtube	muscle
44	chr1:220368600-220383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr1:220369600-220375400	Strong transcription	Fetal Intestine Large	intestine
46	chr1:220370000-220385200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:220370800-220375200	Strong transcription	Primary hematopoietic stem cells	blood
48	chr1:220370800-220376600	Strong transcription	Primary T cells from cord blood	blood
49	chr1:220370800-220376600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr1:220370800-220380400	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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