Variant report

Variant	rs12027967
Chromosome Location	chr1:213703408-213703409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10864049	0.84[AFR][1000 genomes]
rs11120151	0.83[AFR][1000 genomes]
rs11120152	0.84[AFR][1000 genomes]
rs11120153	0.84[AFR][1000 genomes]
rs11120154	0.84[AFR][1000 genomes]
rs2165131	0.81[AFR][1000 genomes]
rs320390	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs433540	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4655294	0.83[AFR][1000 genomes]
rs4655295	0.88[AFR][1000 genomes]
rs4655446	0.83[AFR][1000 genomes]
rs4655447	0.84[AFR][1000 genomes]
rs4655448	0.84[AFR][1000 genomes]
rs920355	0.84[AFR][1000 genomes]
rs920356	0.84[AFR][1000 genomes]
rs920357	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213698000-213703800	Weak transcription	Right Ventricle	heart
2	chr1:213700000-213703600	Weak transcription	Fetal Heart	heart
3	chr1:213700400-213703600	Weak transcription	Fetal Lung	lung
4	chr1:213703400-213705800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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