Variant report

Variant	rs320390
Chromosome Location	chr1:213695767-213695768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1078308	0.82[EUR][1000 genomes]
rs10864049	0.87[EUR][1000 genomes]
rs10864050	0.87[EUR][1000 genomes]
rs11120152	0.87[EUR][1000 genomes]
rs11120153	0.87[EUR][1000 genomes]
rs11120154	0.87[EUR][1000 genomes]
rs12027967	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2165131	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs433540	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4655294	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4655295	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4655446	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4655447	0.87[EUR][1000 genomes]
rs4655448	0.87[EUR][1000 genomes]
rs893665	0.87[EUR][1000 genomes]
rs893666	0.87[EUR][1000 genomes]
rs920355	0.87[EUR][1000 genomes]
rs920356	0.87[EUR][1000 genomes]
rs920357	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213694400-213697000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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