Variant report

Variant	rs1078308
Chromosome Location	chr1:213705895-213705896
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10864049	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10864050	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11120152	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11120153	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11120154	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17020842	1.00[CHB][hapmap]
rs2165131	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs320388	1.00[ASN][1000 genomes]
rs320390	0.82[EUR][1000 genomes]
rs320422	0.86[ASN][1000 genomes]
rs320424	0.86[ASN][1000 genomes]
rs320426	1.00[ASN][1000 genomes]
rs383945	0.86[ASN][1000 genomes]
rs450826	0.86[ASN][1000 genomes]
rs4655294	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4655295	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4655297	0.86[ASN][1000 genomes]
rs4655446	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4655447	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4655448	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71635922	0.86[ASN][1000 genomes]
rs893665	0.95[EUR][1000 genomes]
rs893666	0.95[EUR][1000 genomes]
rs920355	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs920356	0.95[EUR][1000 genomes]
rs920357	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213704000-213707000	Enhancers	Brain Germinal Matrix	brain
2	chr1:213704200-213707400	Weak transcription	Right Atrium	heart
3	chr1:213705400-213706800	Weak transcription	Fetal Heart	heart
4	chr1:213705600-213709000	Weak transcription	Pancreas	Pancrea
5	chr1:213705800-213706400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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