Variant report

Variant	rs4655448
Chromosome Location	chr1:213704780-213704781
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1078308	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10864049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10864050	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120151	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11120152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11120154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027967	0.84[AFR][1000 genomes]
rs1391870	0.87[ASN][1000 genomes]
rs1532535	0.87[ASN][1000 genomes]
rs2165131	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2501457	0.87[ASN][1000 genomes]
rs320388	0.86[ASN][1000 genomes]
rs320390	0.87[EUR][1000 genomes]
rs320393	0.87[ASN][1000 genomes]
rs320422	1.00[ASN][1000 genomes]
rs320424	1.00[ASN][1000 genomes]
rs320426	0.86[ASN][1000 genomes]
rs383945	1.00[ASN][1000 genomes]
rs393105	0.87[ASN][1000 genomes]
rs401923	0.87[ASN][1000 genomes]
rs410108	0.87[ASN][1000 genomes]
rs420627	0.81[CEU][hapmap]
rs433540	0.83[EUR][1000 genomes]
rs4655294	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655295	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655446	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893665	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs893666	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs920355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs920356	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs920357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213703400-213705800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:213703600-213704800	Enhancers	Fetal Lung	lung
3	chr1:213703600-213705400	Enhancers	Fetal Heart	heart
4	chr1:213703800-213704800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr1:213703800-213704800	Enhancers	Right Ventricle	heart
6	chr1:213703800-213705000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr1:213704000-213704800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:213704000-213704800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:213704000-213705000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:213704000-213707000	Enhancers	Brain Germinal Matrix	brain
11	chr1:213704200-213707400	Weak transcription	Right Atrium	heart

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