Variant report

Variant	rs393105
Chromosome Location	chr1:213730370-213730371
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:213729520..213732362-chr1:213732486..213735394,2	K562	blood:
2	chr1:213729027..213731700-chr1:214452978..214455881,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143499	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10864049	0.87[ASN][1000 genomes]
rs10864050	0.87[ASN][1000 genomes]
rs11120152	0.87[ASN][1000 genomes]
rs11120153	0.87[ASN][1000 genomes]
rs11120154	0.87[ASN][1000 genomes]
rs1391870	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532535	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165131	0.87[ASN][1000 genomes]
rs2501457	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs320385	0.86[EUR][1000 genomes]
rs320386	0.86[EUR][1000 genomes]
rs320393	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs320422	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs320424	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs383945	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs401923	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073190	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs410108	1.00[CEU][hapmap];0.88[MEX][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs430997	0.86[EUR][1000 genomes]
rs450826	0.92[CEU][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4655294	0.87[ASN][1000 genomes]
rs4655295	0.87[ASN][1000 genomes]
rs4655297	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4655446	0.87[ASN][1000 genomes]
rs4655447	0.87[ASN][1000 genomes]
rs4655448	0.87[ASN][1000 genomes]
rs6682832	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6688254	0.85[EUR][1000 genomes]
rs71635922	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs920355	0.87[ASN][1000 genomes]
rs920357	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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