Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1391870	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1532535	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2501457	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs320385	0.86[EUR][1000 genomes]
rs320386	0.86[EUR][1000 genomes]
rs320393	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs320422	0.88[EUR][1000 genomes]
rs320424	0.88[EUR][1000 genomes]
rs383945	0.88[EUR][1000 genomes]
rs3922680	0.87[ASN][1000 genomes]
rs393105	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs401923	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs410108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs430997	0.86[EUR][1000 genomes]
rs4445432	0.87[ASN][1000 genomes]
rs450826	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs4539108	0.87[ASN][1000 genomes]
rs4655297	0.85[EUR][1000 genomes]
rs6682832	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6688254	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71635922	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213741000-213748200	Enhancers	HepG2	liver
2	chr1:213744600-213748400	Enhancers	Fetal Intestine Large	intestine
3	chr1:213745400-213748200	Enhancers	Fetal Intestine Small	intestine
4	chr1:213747400-213750400	Weak transcription	Small Intestine	intestine
5	chr1:213747400-213758400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr1:213747600-213748000	Weak transcription	Pancreas	Pancrea

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