Variant report

Variant	rs71635922
Chromosome Location	chr1:213741887-213741888
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10157731	0.86[ASN][1000 genomes]
rs10158077	0.86[ASN][1000 genomes]
rs10779604	0.86[ASN][1000 genomes]
rs1078308	0.86[ASN][1000 genomes]
rs10864054	0.86[ASN][1000 genomes]
rs1391870	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1532535	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2501457	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs320388	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs320393	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs320426	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs393105	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs401923	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4073190	0.83[EUR][1000 genomes]
rs410108	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs450826	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655297	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6688254	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3345878	chr1:213714352-213841547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426755	chr1:213714443-213841514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3378592	chr1:213714463-213841484	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213732800-213744200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:213738000-213742200	Weak transcription	Pancreas	Pancrea
3	chr1:213738200-213742000	Weak transcription	Fetal Intestine Large	intestine
4	chr1:213738200-213743000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:213741000-213748200	Enhancers	HepG2	liver
6	chr1:213741400-213742200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr1:213741400-213744200	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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