Variant report

Variant rs12028894
Chromosome Location chr1:228481551-228481552
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228455400-228484800 Weak transcription A549 lung
2 chr1:228456400-228485800 Weak transcription Hela-S3 cervix
3 chr1:228464200-228491600 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr1:228464400-228482000 Weak transcription Fetal Kidney kidney
5 chr1:228464400-228489200 Strong transcription Left Ventricle heart
6 chr1:228464600-228483200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr1:228464600-228483200 Strong transcription Fetal Intestine Small intestine
8 chr1:228464600-228487000 Strong transcription Breast Myoepithelial Primary Cells Breast
9 chr1:228465000-228483600 Strong transcription Right Ventricle heart
10 chr1:228465000-228498000 Weak transcription Fetal Brain Male brain
11 chr1:228465200-228483400 Weak transcription Colonic Mucosa Colon
12 chr1:228465200-228483400 Strong transcription Fetal Stomach stomach
13 chr1:228465600-228483400 Strong transcription Fetal Brain Female brain
14 chr1:228467200-228484200 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr1:228468400-228482600 Weak transcription Primary T regulatory cells fromperipheralblood blood
16 chr1:228471200-228484200 Weak transcription Primary hematopoietic stem cells short term culture blood
17 chr1:228471800-228483400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr1:228471800-228489200 Weak transcription Duodenum Mucosa Duodenum
19 chr1:228472000-228482000 Strong transcription Skeletal Muscle Female skeletal muscle
20 chr1:228472200-228481600 Weak transcription HUES64 Cell Line embryonic stem cell
21 chr1:228472200-228484800 Strong transcription Fetal Muscle Leg muscle
22 chr1:228472200-228490000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr1:228472400-228486000 Weak transcription H9 Cell Line embryonic stem cell
24 chr1:228472400-228486200 Weak transcription iPS-18 Cell Line embryonic stem cell
25 chr1:228473000-228488400 Weak transcription Pancreatic Islets Pancreatic Islet
26 chr1:228473600-228482200 Weak transcription Primary T helper cells fromperipheralblood blood
27 chr1:228474200-228482800 Weak transcription Psoas Muscle Psoas
28 chr1:228475400-228482200 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr1:228476000-228482600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr1:228476200-228484200 Weak transcription Esophagus oesophagus
31 chr1:228476800-228485600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:228477000-228481600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
33 chr1:228479400-228483200 Strong transcription Brain Germinal Matrix brain
34 chr1:228479800-228481800 Strong transcription Pancreas Pancrea
35 chr1:228479800-228483800 Strong transcription Primary T cells from cord blood blood
36 chr1:228480400-228482200 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin01 Skin
37 chr1:228480400-228482800 Strong transcription Fetal Lung lung
38 chr1:228480400-228483000 ZNF genes & repeats H1 Cell Line embryonic stem cell
39 chr1:228480400-228483000 Strong transcription Placenta Amnion Placenta Amnion
40 chr1:228480400-228489600 Strong transcription HSMMtube muscle
41 chr1:228480600-228482800 Strong transcription Spleen Spleen
42 chr1:228480600-228483200 Strong transcription Brain Anterior Caudate brain
43 chr1:228480600-228483600 Strong transcription Primary T helper naive cells fromperipheralblood blood
44 chr1:228480800-228483200 Strong transcription Fetal Heart heart
45 chr1:228480800-228483200 Strong transcription Thymus Thymus
46 chr1:228480800-228483600 Strong transcription Dnd41 blood
47 chr1:228480800-228483800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr1:228480800-228484600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr1:228481000-228481600 Strong transcription Fetal Intestine Large intestine
50 chr1:228481000-228482400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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