Variant report

Variant rs12022027
Chromosome Location chr1:228462896-228462897
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228445000-228463200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:228447600-228463000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr1:228447800-228463000 Weak transcription Psoas Muscle Psoas
4 chr1:228450000-228463000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr1:228452400-228463000 Weak transcription Primary hematopoietic stem cells blood
6 chr1:228455400-228484800 Weak transcription A549 lung
7 chr1:228456400-228485800 Weak transcription Hela-S3 cervix
8 chr1:228456600-228463200 Weak transcription Aorta Aorta
9 chr1:228457200-228472000 Weak transcription Fetal Heart heart
10 chr1:228459200-228463000 Strong transcription Left Ventricle heart
11 chr1:228459200-228463000 Weak transcription HUVEC blood vessel
12 chr1:228459400-228463000 Strong transcription Fetal Intestine Small intestine
13 chr1:228459400-228463000 Strong transcription Thymus Thymus
14 chr1:228459800-228463000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr1:228459800-228463000 Weak transcription Right Atrium heart
16 chr1:228459800-228469600 Weak transcription HSMMtube muscle
17 chr1:228460000-228463000 Weak transcription Primary T cells from cord blood blood
18 chr1:228460800-228463000 Weak transcription Primary hematopoietic stem cells short term culture blood
19 chr1:228461000-228463000 Weak transcription NHLF lung
20 chr1:228461400-228463000 Weak transcription Brain Cingulate Gyrus brain
21 chr1:228461800-228463000 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:228461800-228463400 Bivalent Enhancer Placenta Placenta
23 chr1:228462200-228463000 Enhancers Primary T killer memory cells from peripheral blood blood
24 chr1:228462200-228463000 Enhancers Pancreas Pancrea
25 chr1:228462200-228463000 Enhancers Placenta Amnion Placenta Amnion
26 chr1:228462400-228463000 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr1:228462400-228463000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
28 chr1:228462400-228463000 Genic enhancers Breast Myoepithelial Primary Cells Breast
29 chr1:228462400-228463000 Genic enhancers Fetal Muscle Trunk muscle
30 chr1:228462400-228463000 Genic enhancers Fetal Muscle Leg muscle
31 chr1:228462400-228463000 Genic enhancers Right Ventricle heart
32 chr1:228462400-228463200 Enhancers Gastric stomach
33 chr1:228462400-228463200 Enhancers Spleen Spleen
34 chr1:228462400-228464200 Weak transcription Dnd41 blood
35 chr1:228462600-228463000 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
36 chr1:228462600-228463000 Enhancers Primary B cells from cord blood blood
37 chr1:228462600-228463000 Enhancers Primary B cells from peripheral blood blood
38 chr1:228462600-228463000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
39 chr1:228462600-228463000 Enhancers Primary Natural Killer cells fromperipheralblood blood
40 chr1:228462600-228463000 Enhancers Primary T killer naive cells fromperipheralblood blood
41 chr1:228462600-228463000 Weak transcription Fetal Intestine Large intestine
42 chr1:228462600-228463000 Bivalent/Poised TSS Rectal Smooth Muscle rectum
43 chr1:228462600-228463400 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
44 chr1:228462600-228463400 Flanking Active TSS Stomach Smooth Muscle stomach
45 chr1:228462600-228464400 Transcr. at gene 5' and 3' iPS DF 19.11 Cell Line embryonic stem cell
46 chr1:228462800-228463000 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
47 chr1:228462800-228463000 Transcr. at gene 5' and 3' IMR90 fetal lung fibroblasts Cell Line lung
48 chr1:228462800-228463000 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr1:228462800-228463000 Enhancers Primary monocytes fromperipheralblood blood
50 chr1:228462800-228463000 Enhancers Primary T helper memory cells from peripheral blood 1 blood

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