The 2.0 version of rSNPBase

Variant report

Variant rs12030528
Chromosome Location chr1:228467087-228467088
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228455400-228484800 Weak transcription A549 lung
2 chr1:228456400-228485800 Weak transcription Hela-S3 cervix
3 chr1:228457200-228472000 Weak transcription Fetal Heart heart
4 chr1:228459800-228469600 Weak transcription HSMMtube muscle
5 chr1:228463800-228481400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr1:228464000-228472200 Weak transcription Small Intestine intestine
7 chr1:228464200-228470400 Weak transcription HMEC breast
8 chr1:228464200-228470600 Weak transcription Aorta Aorta
9 chr1:228464200-228473800 Weak transcription Psoas Muscle Psoas
10 chr1:228464200-228473800 Weak transcription NHEK skin
11 chr1:228464200-228478000 Strong transcription Dnd41 blood
12 chr1:228464200-228491600 Weak transcription Primary T killer memory cells from peripheral blood blood
13 chr1:228464400-228467600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr1:228464400-228468000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr1:228464400-228468400 Weak transcription Rectal Smooth Muscle rectum
16 chr1:228464400-228469200 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr1:228464400-228470600 Weak transcription Primary hematopoietic stem cells short term culture blood
18 chr1:228464400-228470600 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr1:228464400-228471800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr1:228464400-228472000 Genic enhancers Skeletal Muscle Female skeletal muscle
21 chr1:228464400-228473000 Weak transcription Brain Inferior Temporal Lobe brain
22 chr1:228464400-228478400 Strong transcription Thymus Thymus
23 chr1:228464400-228479600 Weak transcription Right Atrium heart
24 chr1:228464400-228481400 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr1:228464400-228482000 Weak transcription Fetal Kidney kidney
26 chr1:228464400-228489200 Strong transcription Left Ventricle heart
27 chr1:228464600-228467200 Weak transcription Duodenum Mucosa Duodenum
28 chr1:228464600-228467400 Genic enhancers Skeletal Muscle Male skeletal muscle
29 chr1:228464600-228467800 Weak transcription Primary T helper cells PMA-I stimulated --
30 chr1:228464600-228467800 Weak transcription Primary T helper cells fromperipheralblood blood
31 chr1:228464600-228468400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:228464600-228468800 Weak transcription iPS-18 Cell Line embryonic stem cell
33 chr1:228464600-228470800 Weak transcription Adipose Nuclei Adipose
34 chr1:228464600-228473600 Weak transcription Primary B cells from cord blood blood
35 chr1:228464600-228475400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr1:228464600-228476800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:228464600-228481400 Weak transcription Primary hematopoietic stem cells blood
38 chr1:228464600-228483200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:228464600-228483200 Strong transcription Fetal Intestine Small intestine
40 chr1:228464600-228487000 Strong transcription Breast Myoepithelial Primary Cells Breast
41 chr1:228464800-228472600 Strong transcription Fetal Thymus thymus
42 chr1:228464800-228476800 Strong transcription HUES6 Cell Line embryonic stem cell
43 chr1:228464800-228477400 Strong transcription Primary T cells from cord blood blood
44 chr1:228465000-228467200 Weak transcription Primary T cells fromperipheralblood blood
45 chr1:228465000-228468400 Weak transcription Primary B cells from peripheral blood blood
46 chr1:228465000-228469600 Strong transcription Fetal Muscle Leg muscle
47 chr1:228465000-228471800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
48 chr1:228465000-228472400 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr1:228465000-228476000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr1:228465000-228483600 Strong transcription Right Ventricle heart

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Last update: Aug 31, 2015