Variant report

Variant	rs1204216
Chromosome Location	chr6:13863716-13863717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1204188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1204193	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1204194	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1204244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6931876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs750706	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3475107	chr6:13834840-13863839	Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3475109	chr6:13835023-13863759	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13847800-13864000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:13860800-13864000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:13862400-13865200	Enhancers	Fetal Intestine Large	intestine
4	chr6:13862600-13865600	Enhancers	Fetal Intestine Small	intestine
5	chr6:13863400-13863800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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