Variant report

Variant	rs1204244
Chromosome Location	chr6:13874420-13874421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13865780..13870823-chr6:13871256..13876608,7	MCF-7	breast:
2	chr6:13812945..13816149-chr6:13872114..13877655,8	MCF-7	breast:
3	chr6:13874090..13874874-chr6:14066795..14067659,3	K562	blood:
4	chr6:13812471..13815841-chr6:13872539..13875076,5	MCF-7	breast:
5	chr6:13795311..13796160-chr6:13873802..13874794,4	MCF-7	breast:
6	chr6:13814061..13814802-chr6:13873658..13874479,3	MCF-7	breast:
7	chr6:13710997..13713302-chr6:13872875..13875469,2	MCF-7	breast:
8	chr6:13862519..13866858-chr6:13869223..13874616,6	K562	blood:
9	chr6:13796697..13799151-chr6:13873645..13875272,3	MCF-7	breast:
10	chr6:13849255..13851756-chr6:13872753..13875703,2	K562	blood:
11	chr6:13872400..13875696-chr6:13875999..13878968,3	MCF-7	breast:
12	chr6:13796616..13797752-chr6:13874024..13874654,3	MCF-7	breast:
13	chr6:13874162..13876058-chr6:13879893..13881410,2	MCF-7	breast:
14	chr6:13873864..13874605-chr6:14067125..14067679,2	MCF-7	breast:
15	chr6:13873712..13874564-chr6:13909035..13909823,2	K562	blood:
16	chr6:13872608..13875601-chr6:13884105..13886599,2	MCF-7	breast:
17	chr6:13865916..13870763-chr6:13872402..13875554,5	MCF-7	breast:
18	chr6:13873516..13875377-chr6:14063760..14065497,2	K562	blood:
19	chr20:52559951..52560586-chr6:13874016..13874570,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000050393	Chromatin interaction
ENSG00000010017	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1204188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1204193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1204194	1.00[EUR][1000 genomes]
rs1204216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1204236	0.80[AFR][1000 genomes]
rs6924039	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6931876	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs750706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13872600-13874600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:13873200-13874800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr6:13873200-13874800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:13873400-13874600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:13873400-13874600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
6	chr6:13873400-13874800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:13873400-13874800	Enhancers	Fetal Brain Male	brain
8	chr6:13873600-13874600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr6:13873600-13874600	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr6:13873600-13874600	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr6:13873600-13874600	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr6:13873600-13874600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr6:13873600-13874600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:13873600-13874600	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr6:13873600-13874600	Flanking Active TSS	Liver	Liver
16	chr6:13873600-13874600	Active TSS	Fetal Intestine Small	intestine
17	chr6:13873600-13874600	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr6:13873600-13874600	Flanking Active TSS	Placenta	Placenta
19	chr6:13873600-13874600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
20	chr6:13873600-13874600	Flanking Active TSS	Fetal Thymus	thymus
21	chr6:13873600-13874600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr6:13873600-13874600	Flanking Bivalent TSS/Enh	HepG2	liver
23	chr6:13873600-13874600	Flanking Active TSS	NHEK	skin
24	chr6:13873600-13874800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
25	chr6:13873600-13874800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr6:13873600-13874800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr6:13873600-13874800	Flanking Active TSS	Duodenum Mucosa	Duodenum
28	chr6:13873600-13874800	Flanking Active TSS	Pancreas	Pancrea
29	chr6:13873600-13874800	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr6:13873600-13874800	Active TSS	A549	lung
31	chr6:13873600-13874800	Flanking Active TSS	K562	blood
32	chr6:13873800-13874600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:13873800-13874600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
34	chr6:13873800-13874600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:13873800-13874600	Flanking Active TSS	Primary B cells from peripheral blood	blood
36	chr6:13873800-13874600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
37	chr6:13873800-13874600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:13873800-13874600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:13873800-13874600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr6:13873800-13874600	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:13873800-13874600	Enhancers	Fetal Heart	heart
42	chr6:13873800-13874600	Flanking Active TSS	GM12878-XiMat	blood
43	chr6:13874000-13874600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
44	chr6:13874000-13874600	Active TSS	Primary T cells from cord blood	blood
45	chr6:13874000-13874600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:13874000-13874600	Flanking Active TSS	Colonic Mucosa	Colon
47	chr6:13874000-13874600	Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr6:13874000-13874600	Active TSS	Rectal Mucosa Donor 31	rectum
49	chr6:13874000-13874800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr6:13874200-13874600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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