Variant report

Variant	rs1204233
Chromosome Location	chr6:13871372-13871373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1204189	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1204196	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1204211	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1204221	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1204222	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1204243	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1204250	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1204252	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1204263	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1475251	0.94[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13864400-13872600	Weak transcription	Placenta	Placenta
2	chr6:13865600-13873200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:13867200-13872600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:13867200-13872600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:13868400-13873400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:13869800-13871600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:13870400-13871400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:13870600-13871400	Enhancers	Brain Cingulate Gyrus	brain
9	chr6:13870600-13871400	Enhancers	Fetal Muscle Leg	muscle
10	chr6:13870800-13873600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:13870800-13873600	Weak transcription	Fetal Lung	lung
12	chr6:13871000-13873800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:13871200-13873200	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:13871200-13873400	Weak transcription	Fetal Brain Male	brain
15	chr6:13871200-13873800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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