Variant report

Variant	rs1204263
Chromosome Location	chr6:13882360-13882361
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1204189	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1204196	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1204211	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1204221	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1204222	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1204233	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1204243	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1204250	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1204252	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35376934	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3420238	chr6:13880473-13885771	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3400999	chr6:13881864-13884220	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3379567	chr6:13882226-13884187	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13880200-13882600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:13881000-13882400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:13881400-13882400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:13881400-13882600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:13881400-13882600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:13881600-13882400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:13881600-13882600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:13881800-13882400	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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