Variant report

Variant	rs1204375
Chromosome Location	chr7:105412253-105412254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105411694..105416856-chr7:105416985..105421680,5	MCF-7	breast:
2	chr7:105408949..105411804-chr7:105412026..105413958,2	K562	blood:
3	chr7:105410918..105413665-chr7:105515642..105517769,2	MCF-7	breast:
4	chr7:105409840..105412266-chr7:105415656..105418667,3	K562	blood:

Variant related genes	Relation type
ENSG00000128536	Chromatin interaction
ENSG00000146776	Chromatin interaction

rs_ID	r²[population]
rs1204371	0.87[CHB][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs479506	0.90[CEU][hapmap]
rs514122	0.84[CEU][hapmap]
rs572250	0.95[CEU][hapmap]
rs589647	0.84[CEU][hapmap]
rs608683	0.92[ASN][1000 genomes]
rs7780384	0.87[ASN][1000 genomes]

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105359800-105438600	Weak transcription	Pancreas	Pancrea
2	chr7:105364600-105416400	Weak transcription	Brain Angular Gyrus	brain
3	chr7:105367200-105428800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:105379400-105416200	Weak transcription	Left Ventricle	heart
5	chr7:105384600-105438600	Weak transcription	Spleen	Spleen
6	chr7:105385000-105434800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:105386600-105416600	Weak transcription	Right Ventricle	heart
8	chr7:105389000-105432400	Weak transcription	Esophagus	oesophagus
9	chr7:105393800-105428600	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:105399400-105413600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:105400600-105438400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:105400800-105436800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:105401800-105416000	Weak transcription	Fetal Intestine Small	intestine
14	chr7:105402800-105427400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr7:105403000-105416400	Weak transcription	Primary T cells from cord blood	blood
16	chr7:105403000-105428200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr7:105406600-105413800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:105406600-105428600	Weak transcription	Gastric	stomach
19	chr7:105407800-105423000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr7:105408400-105417000	Weak transcription	Fetal Intestine Large	intestine
21	chr7:105408600-105413800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:105408800-105416000	Weak transcription	HepG2	liver
23	chr7:105409000-105416000	Weak transcription	Ovary	ovary
24	chr7:105409200-105415600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr7:105409600-105412400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr7:105409600-105412800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:105410400-105413000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr7:105410400-105413000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr7:105410600-105413000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr7:105410800-105417600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr7:105411000-105413000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:105411000-105413200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:105411000-105415600	Weak transcription	HSMM	muscle
34	chr7:105411000-105415800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr7:105411000-105415800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:105411200-105412800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:105411200-105412800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr7:105411200-105413000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr7:105411200-105413000	Weak transcription	Fetal Brain Female	brain
40	chr7:105411200-105413400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr7:105411200-105413400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:105411200-105413400	Weak transcription	Brain Germinal Matrix	brain
43	chr7:105411200-105413400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr7:105411200-105413600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr7:105411200-105413800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:105411200-105413800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr7:105411200-105413800	Weak transcription	Aorta	Aorta
48	chr7:105411200-105413800	Weak transcription	Colon Smooth Muscle	Colon
49	chr7:105411200-105413800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr7:105411200-105415400	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links