Variant report

Variant	rs514122
Chromosome Location	chr7:105406916-105406917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105405713..105407484-chr7:105607269..105610075,2	K562	blood:
2	chr7:105406325..105408291-chr7:105722080..105723777,2	MCF-7	breast:
3	chr7:105405303..105407790-chr7:105815153..105817259,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1204375	0.84[CEU][hapmap]
rs1544476	1.00[ASW][hapmap];0.94[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4730105	0.89[CEU][hapmap];0.85[GIH][hapmap];0.84[MKK][hapmap];0.80[ASN][1000 genomes]
rs549091	0.86[CEU][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs552311	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs589647	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs590824	0.89[CEU][hapmap];0.85[GIH][hapmap];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs514122	MYL10	cis	parietal	SCAN

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105359800-105438600	Weak transcription	Pancreas	Pancrea
2	chr7:105364600-105416400	Weak transcription	Brain Angular Gyrus	brain
3	chr7:105367200-105428800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:105379400-105416200	Weak transcription	Left Ventricle	heart
5	chr7:105382600-105410400	Weak transcription	Right Atrium	heart
6	chr7:105384600-105438600	Weak transcription	Spleen	Spleen
7	chr7:105385000-105434800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:105386600-105416600	Weak transcription	Right Ventricle	heart
9	chr7:105389000-105432400	Weak transcription	Esophagus	oesophagus
10	chr7:105389200-105410400	Weak transcription	Aorta	Aorta
11	chr7:105389800-105408800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:105392800-105407000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:105392800-105407000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr7:105392800-105409000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:105393200-105410000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:105393400-105409000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:105393800-105411000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr7:105393800-105428600	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:105397000-105410000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:105399400-105407400	Weak transcription	Fetal Intestine Large	intestine
21	chr7:105399400-105408800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:105399400-105409000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:105399400-105413600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:105400200-105407800	Weak transcription	Ovary	ovary
25	chr7:105400200-105410400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:105400600-105438400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr7:105400800-105410200	Weak transcription	Fetal Kidney	kidney
28	chr7:105400800-105436800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr7:105401000-105410000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr7:105401200-105407000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr7:105401200-105409200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:105401200-105409200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr7:105401200-105409600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:105401200-105410200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:105401400-105410200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:105401400-105410200	Weak transcription	Osteobl	bone
37	chr7:105401800-105407600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr7:105401800-105410600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:105401800-105416000	Weak transcription	Fetal Intestine Small	intestine
40	chr7:105402200-105409600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:105402200-105410600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr7:105402600-105409200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:105402800-105427400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr7:105403000-105416400	Weak transcription	Primary T cells from cord blood	blood
45	chr7:105403000-105428200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr7:105403800-105407000	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr7:105405200-105410400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:105405800-105407200	Enhancers	NHDF-Ad	bronchial
49	chr7:105405800-105407800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr7:105405800-105408200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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