The 2.0 version of rSNPBase

Variant report

Variant rs552311
Chromosome Location chr7:105411624-105411625
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:105359800-105438600 Weak transcription Pancreas Pancrea
2 chr7:105364600-105416400 Weak transcription Brain Angular Gyrus brain
3 chr7:105367200-105428800 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr7:105379400-105416200 Weak transcription Left Ventricle heart
5 chr7:105384600-105438600 Weak transcription Spleen Spleen
6 chr7:105385000-105434800 Weak transcription Monocytes-CD14+_RO01746 blood
7 chr7:105386600-105416600 Weak transcription Right Ventricle heart
8 chr7:105389000-105432400 Weak transcription Esophagus oesophagus
9 chr7:105393800-105428600 Weak transcription Brain Hippocampus Middle brain
10 chr7:105399400-105413600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr7:105400600-105438400 Weak transcription Duodenum Mucosa Duodenum
12 chr7:105400800-105436800 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr7:105401800-105416000 Weak transcription Fetal Intestine Small intestine
14 chr7:105402800-105427400 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr7:105403000-105416400 Weak transcription Primary T cells from cord blood blood
16 chr7:105403000-105428200 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr7:105406400-105412000 Enhancers Fetal Lung lung
18 chr7:105406600-105413800 Weak transcription H9 Cell Line embryonic stem cell
19 chr7:105406600-105428600 Weak transcription Gastric stomach
20 chr7:105407800-105423000 Weak transcription Primary T cells fromperipheralblood blood
21 chr7:105408400-105417000 Weak transcription Fetal Intestine Large intestine
22 chr7:105408600-105413800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
23 chr7:105408800-105416000 Weak transcription HepG2 liver
24 chr7:105409000-105416000 Weak transcription Ovary ovary
25 chr7:105409200-105415600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
26 chr7:105409400-105412200 Enhancers NHDF-Ad bronchial
27 chr7:105409600-105412400 Enhancers ES-I3 Cell Line embryonic stem cell
28 chr7:105409600-105412800 Weak transcription iPS-18 Cell Line embryonic stem cell
29 chr7:105410400-105413000 Weak transcription ES-WA7 Cell Line embryonic stem cell
30 chr7:105410400-105413000 Weak transcription HUES48 Cell Line embryonic stem cell
31 chr7:105410600-105413000 Weak transcription iPS-20b Cell Line embryonic stem cell
32 chr7:105410800-105417600 Weak transcription Pancreatic Islets Pancreatic Islet
33 chr7:105411000-105411800 Weak transcription iPS-15b Cell Line embryonic stem cell
34 chr7:105411000-105411800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr7:105411000-105413000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr7:105411000-105413200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr7:105411000-105415600 Weak transcription HSMM muscle
38 chr7:105411000-105415800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr7:105411000-105415800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr7:105411200-105412000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr7:105411200-105412200 Weak transcription Muscle Satellite Cultured Cells --
42 chr7:105411200-105412800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr7:105411200-105412800 Weak transcription HUES64 Cell Line embryonic stem cell
44 chr7:105411200-105413000 Weak transcription H1 Cell Line embryonic stem cell
45 chr7:105411200-105413000 Weak transcription Fetal Brain Female brain
46 chr7:105411200-105413400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr7:105411200-105413400 Weak transcription Cortex derived primary cultured neurospheres brain
48 chr7:105411200-105413400 Weak transcription Brain Germinal Matrix brain
49 chr7:105411200-105413400 Weak transcription Skeletal Muscle Male skeletal muscle
50 chr7:105411200-105413600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015