Variant report

Variant	rs4730105
Chromosome Location	chr7:105421445-105421446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105411694..105416856-chr7:105416985..105421680,5	MCF-7	breast:
2	chr7:105418242..105420213-chr7:105421359..105423266,2	K562	blood:
3	chr7:105418693..105422569-chr7:105427730..105430708,5	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1544476	0.84[CEU][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs514122	0.89[CEU][hapmap];0.85[GIH][hapmap];0.84[MKK][hapmap];0.80[ASN][1000 genomes]
rs549091	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs552311	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs589647	0.89[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs590824	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.90[LWK][hapmap];0.93[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4730105	ATXN7L1	cis	parietal	SCAN
rs4730105	MYL10	cis	parietal	SCAN

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105359800-105438600	Weak transcription	Pancreas	Pancrea
2	chr7:105367200-105428800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:105384600-105438600	Weak transcription	Spleen	Spleen
4	chr7:105385000-105434800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:105389000-105432400	Weak transcription	Esophagus	oesophagus
6	chr7:105393800-105428600	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:105400600-105438400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:105400800-105436800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:105402800-105427400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr7:105403000-105428200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:105406600-105428600	Weak transcription	Gastric	stomach
12	chr7:105407800-105423000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr7:105411200-105422800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:105411200-105423400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:105411200-105426400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr7:105411200-105435400	Weak transcription	Right Atrium	heart
17	chr7:105411400-105424400	Weak transcription	Fetal Stomach	stomach
18	chr7:105411400-105428800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:105414200-105427800	Weak transcription	Brain Germinal Matrix	brain
20	chr7:105414400-105432800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:105414800-105443600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr7:105416600-105427400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:105416800-105423200	Weak transcription	Fetal Intestine Small	intestine
24	chr7:105416800-105427400	Weak transcription	Left Ventricle	heart
25	chr7:105416800-105428600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr7:105416800-105433800	Weak transcription	Brain Angular Gyrus	brain
27	chr7:105417200-105422600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:105417200-105422600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:105417200-105441800	Weak transcription	HepG2	liver
30	chr7:105417400-105427400	Weak transcription	Hela-S3	cervix
31	chr7:105417400-105439200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:105417800-105422800	Weak transcription	Aorta	Aorta
33	chr7:105417800-105426200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:105417800-105427400	Weak transcription	Placenta	Placenta
35	chr7:105417800-105430000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr7:105418000-105422600	Weak transcription	HMEC	breast
37	chr7:105418000-105435400	Weak transcription	Brain Substantia Nigra	brain
38	chr7:105418200-105422400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr7:105418200-105422400	Weak transcription	Fetal Intestine Large	intestine
40	chr7:105418200-105422600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:105418200-105422600	Weak transcription	HSMM	muscle
42	chr7:105418200-105422800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:105418200-105422800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr7:105418200-105422800	Weak transcription	HSMMtube	muscle
45	chr7:105418200-105432400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr7:105418200-105440600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr7:105418400-105422600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr7:105418400-105422600	Weak transcription	NH-A	brain
49	chr7:105418400-105422600	Weak transcription	NHDF-Ad	bronchial
50	chr7:105418400-105422600	Weak transcription	Osteobl	bone

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