Variant report

Variant	rs12045356
Chromosome Location	chr1:159335276-159335277
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11265174	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11265186	0.97[ASN][1000 genomes]
rs11265187	0.97[ASN][1000 genomes]
rs11265193	0.97[ASN][1000 genomes]
rs12041803	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12118628	0.95[ASN][1000 genomes]
rs12131860	0.97[ASN][1000 genomes]
rs12145616	0.95[ASN][1000 genomes]
rs12410729	0.93[ASN][1000 genomes]
rs4128725	0.95[ASN][1000 genomes]
rs4269772	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4326616	0.91[ASN][1000 genomes]
rs4656237	0.93[ASN][1000 genomes]
rs4656821	0.97[ASN][1000 genomes]
rs4656826	0.92[ASN][1000 genomes]
rs9782926	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159332800-159336200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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