Variant report
| Variant | rs9782926 |
|---|---|
| Chromosome Location | chr1:159323392-159323393 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FCER1A-1 | chr1:159323317-159323959 | ucscGeneNc_uc001fxp_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11265174 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11265186 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs11265187 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs11265193 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs12041803 | 0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12045356 | 0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12074934 | 0.83[AFR][1000 genomes] |
| rs12118628 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs12131860 | 0.95[ASN][1000 genomes] |
| rs12145616 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs12410729 | 0.91[ASN][1000 genomes] |
| rs16842041 | 0.88[AFR][1000 genomes] |
| rs2494263 | 0.80[CEU][hapmap] |
| rs4128725 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs4269772 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4326616 | 0.89[ASN][1000 genomes] |
| rs4656237 | 0.91[ASN][1000 genomes] |
| rs4656821 | 0.95[ASN][1000 genomes] |
| rs4656826 | 0.90[ASN][1000 genomes] |
| rs7552141 | 0.89[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872487 | chr1:159196765-159342439 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv872488 | chr1:159218266-159336948 | Flanking Active TSS Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
