Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159283391..159285950-chr1:159289542..159292391,2	K562	blood:
2	chr1:159284450..159286758-chr1:159290308..159292391,2	K562	blood:

Variant related genes	Relation type
ENSG00000196266	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11265174	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11265186	0.94[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs11265187	0.94[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs11265193	0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs12041803	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12045356	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12118628	0.94[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12131860	0.80[ASN][1000 genomes]
rs12145616	0.94[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs2427824	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2427825	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2427828	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2494260	1.00[YRI][hapmap]
rs2494261	1.00[YRI][hapmap]
rs2494263	1.00[YRI][hapmap]
rs2494265	1.00[YRI][hapmap]
rs2511212	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs4128725	0.94[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs4656821	0.80[ASN][1000 genomes]
rs9782926	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872487	chr1:159196765-159342439	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv872488	chr1:159218266-159336948	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4269772	SLC27A3	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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