Variant report

Variant	rs12047440
Chromosome Location	chr1:73456260-73456261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11210107	0.83[EUR][1000 genomes]
rs12567284	0.83[EUR][1000 genomes]
rs4430278	0.88[AFR][1000 genomes]
rs6694433	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73455200-73456800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr1:73455400-73456600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:73455400-73456600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:73456000-73456400	Active TSS	H9 Cell Line	embryonic stem cell
5	chr1:73456200-73456600	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr1:73456200-73460400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links