Variant report

Variant	rs6694433
Chromosome Location	chr1:73450470-73450471
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11210099	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11210100	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11210103	0.82[AFR][1000 genomes]
rs11803263	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12025473	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12042865	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12044276	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12047440	0.85[ASN][1000 genomes]
rs12122377	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12724536	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4233093	0.82[ASN][1000 genomes]
rs4269731	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4579707	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4589057	0.83[EUR][1000 genomes]
rs61772326	0.82[EUR][1000 genomes]
rs6424507	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6657069	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6667006	0.84[EUR][1000 genomes]
rs6667756	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66820357	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7516673	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7528791	0.87[EUR][1000 genomes]
rs7536364	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7540420	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9970090	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv945881	chr1:73446047-73452705	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73443000-73451200	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:73443000-73451800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:73446000-73451200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:73448600-73450800	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr1:73448600-73451200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr1:73448600-73451200	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr1:73449200-73451200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:73449200-73451400	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr1:73450000-73452600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:73450400-73451200	Active TSS	HUES6 Cell Line	embryonic stem cell

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