Variant report

Variant	rs61772326
Chromosome Location	chr3:70489283-70489284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10493513	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10493514	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11210099	0.83[EUR][1000 genomes]
rs11210100	0.86[EUR][1000 genomes]
rs11210101	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11210115	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11210117	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11210118	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11210120	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11210128	0.83[ASN][1000 genomes]
rs11577664	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11803263	0.86[EUR][1000 genomes]
rs12025473	0.87[EUR][1000 genomes]
rs12042865	0.85[EUR][1000 genomes]
rs12118981	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12122055	0.86[ASN][1000 genomes]
rs12122377	0.87[EUR][1000 genomes]
rs12136682	0.82[ASN][1000 genomes]
rs12137361	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12137741	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12405997	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12724056	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12724536	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12745861	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34477433	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35531383	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4130885	0.83[ASN][1000 genomes]
rs4233096	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4233101	0.83[ASN][1000 genomes]
rs4233103	0.83[ASN][1000 genomes]
rs4263954	0.83[ASN][1000 genomes]
rs4298682	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4328030	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4344272	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4344273	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4355999	0.83[ASN][1000 genomes]
rs4409593	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4425940	0.82[ASN][1000 genomes]
rs4456055	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4469676	0.83[ASN][1000 genomes]
rs4579707	0.83[EUR][1000 genomes]
rs4589057	0.86[EUR][1000 genomes]
rs4592217	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4603080	0.83[ASN][1000 genomes]
rs4649972	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4649976	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4650188	0.83[ASN][1000 genomes]
rs61772284	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6424507	0.83[EUR][1000 genomes]
rs6657069	0.85[EUR][1000 genomes]
rs6662171	0.83[ASN][1000 genomes]
rs6667006	0.86[EUR][1000 genomes]
rs6667756	0.86[EUR][1000 genomes]
rs6670428	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66820357	0.89[EUR][1000 genomes]
rs6682845	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6690119	0.83[ASN][1000 genomes]
rs6694433	0.82[EUR][1000 genomes]
rs7516673	0.84[EUR][1000 genomes]
rs7528197	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7528791	0.85[EUR][1000 genomes]
rs7536364	0.83[EUR][1000 genomes]
rs7540296	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7540420	0.85[EUR][1000 genomes]
rs9645298	0.83[ASN][1000 genomes]
rs9970090	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv3867	chr3:70480358-70525397	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70489200-70489600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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