Variant report

Variant	rs6657069
Chromosome Location	chr1:73450706-73450707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10889999	0.83[ASN][1000 genomes]
rs11210099	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11210100	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11210101	0.81[EUR][1000 genomes]
rs11210103	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11210107	0.80[ASN][1000 genomes]
rs11210114	0.82[ASN][1000 genomes]
rs11210119	0.82[ASN][1000 genomes]
rs11577664	0.81[EUR][1000 genomes]
rs11803263	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12025473	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12042865	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12044276	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12122377	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12137361	0.81[EUR][1000 genomes]
rs12567284	0.80[ASN][1000 genomes]
rs12724536	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12729632	0.80[ASN][1000 genomes]
rs12748124	0.80[ASN][1000 genomes]
rs35531383	0.83[EUR][1000 genomes]
rs36093886	0.80[ASN][1000 genomes]
rs4233093	0.87[ASN][1000 genomes]
rs4269731	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4328030	0.82[EUR][1000 genomes]
rs4344272	0.83[EUR][1000 genomes]
rs4409593	0.83[EUR][1000 genomes]
rs4456055	0.83[EUR][1000 genomes]
rs4559446	0.80[ASN][1000 genomes]
rs4579707	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4589057	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4649972	0.80[EUR][1000 genomes]
rs4649975	0.82[ASN][1000 genomes]
rs61772284	0.81[EUR][1000 genomes]
rs61772326	0.85[EUR][1000 genomes]
rs6424507	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6424508	0.83[ASN][1000 genomes]
rs6667006	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6667756	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66820357	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6693460	0.83[ASN][1000 genomes]
rs6694433	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7516446	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7516673	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7519995	0.83[ASN][1000 genomes]
rs7525662	0.82[ASN][1000 genomes]
rs7526372	0.83[ASN][1000 genomes]
rs7528312	0.82[ASN][1000 genomes]
rs7528791	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7536364	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7540296	0.80[EUR][1000 genomes]
rs7540420	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7552256	0.83[ASN][1000 genomes]
rs9919151	0.83[ASN][1000 genomes]
rs9970090	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv945881	chr1:73446047-73452705	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73443000-73451200	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:73443000-73451800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:73446000-73451200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:73448600-73450800	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr1:73448600-73451200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr1:73448600-73451200	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr1:73449200-73451200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:73449200-73451400	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr1:73450000-73452600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:73450400-73451200	Active TSS	HUES6 Cell Line	embryonic stem cell

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