Variant report

Variant	rs9970090
Chromosome Location	chr1:73382356-73382357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10493513	0.90[EUR][1000 genomes]
rs10493514	0.90[EUR][1000 genomes]
rs10889999	0.85[ASN][1000 genomes]
rs11210084	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11210085	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11210099	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11210100	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11210103	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11210107	0.82[ASN][1000 genomes]
rs11210114	0.84[ASN][1000 genomes]
rs11210119	0.84[ASN][1000 genomes]
rs11577664	0.85[EUR][1000 genomes]
rs11803263	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12025473	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12039928	0.83[ASN][1000 genomes]
rs12042865	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12044276	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12122377	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12137361	0.89[EUR][1000 genomes]
rs12567284	0.82[ASN][1000 genomes]
rs12724056	0.90[EUR][1000 genomes]
rs12724536	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12729632	0.82[ASN][1000 genomes]
rs12745861	0.90[EUR][1000 genomes]
rs12748124	0.82[ASN][1000 genomes]
rs1464952	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35531383	0.87[EUR][1000 genomes]
rs36093886	0.82[ASN][1000 genomes]
rs4233093	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4269731	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4328030	0.87[EUR][1000 genomes]
rs4344272	0.87[EUR][1000 genomes]
rs4409593	0.87[EUR][1000 genomes]
rs4456055	0.87[EUR][1000 genomes]
rs4559446	0.82[ASN][1000 genomes]
rs4579707	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4589057	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4649972	0.85[EUR][1000 genomes]
rs4649975	0.84[ASN][1000 genomes]
rs61772284	0.89[EUR][1000 genomes]
rs61772326	0.84[EUR][1000 genomes]
rs6424507	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6424508	0.85[ASN][1000 genomes]
rs6657069	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6667006	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6667756	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66820357	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6682845	0.90[EUR][1000 genomes]
rs6689491	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6693460	0.84[ASN][1000 genomes]
rs6694433	0.83[EUR][1000 genomes]
rs7516446	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7516673	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7519995	0.85[ASN][1000 genomes]
rs7525662	0.84[ASN][1000 genomes]
rs7526372	0.85[ASN][1000 genomes]
rs7528312	0.84[ASN][1000 genomes]
rs7528791	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7536364	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7540296	0.85[EUR][1000 genomes]
rs7540420	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7552256	0.85[ASN][1000 genomes]
rs9919151	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013549	chr1:73209040-73408373	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3382727	chr1:73380564-73384062	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73378600-73382600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:73381000-73382600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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