Variant report

Variant	rs12724056
Chromosome Location	chr1:73407650-73407651
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10493513	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10493514	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11210099	0.86[EUR][1000 genomes]
rs11210100	0.86[EUR][1000 genomes]
rs11210101	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11210115	0.88[ASN][1000 genomes]
rs11210117	0.87[ASN][1000 genomes]
rs11210118	0.88[ASN][1000 genomes]
rs11210120	0.88[ASN][1000 genomes]
rs11577664	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11803263	0.84[EUR][1000 genomes]
rs12025473	0.85[EUR][1000 genomes]
rs12042865	0.84[EUR][1000 genomes]
rs12117582	0.83[AFR][1000 genomes]
rs12118981	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12122055	0.81[ASN][1000 genomes]
rs12122377	0.91[EUR][1000 genomes]
rs12129026	0.84[AMR][1000 genomes]
rs12136682	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12137361	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137741	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12405997	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12724536	0.89[EUR][1000 genomes]
rs12745861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34477433	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35531383	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4233096	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4269731	0.82[EUR][1000 genomes]
rs4298682	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4328030	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4344272	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4344273	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4409593	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4456055	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4579707	0.89[EUR][1000 genomes]
rs4589057	0.92[EUR][1000 genomes]
rs4592217	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4649972	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4649976	0.88[ASN][1000 genomes]
rs61772284	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772326	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61774086	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6424507	0.90[EUR][1000 genomes]
rs6656687	0.82[AMR][1000 genomes]
rs6667006	0.87[EUR][1000 genomes]
rs6667756	0.85[EUR][1000 genomes]
rs6670428	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs66820357	0.83[EUR][1000 genomes]
rs6682845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516673	0.87[EUR][1000 genomes]
rs7528197	0.88[ASN][1000 genomes]
rs7528791	0.86[EUR][1000 genomes]
rs7536364	0.90[EUR][1000 genomes]
rs7540296	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7540420	0.86[EUR][1000 genomes]
rs9970090	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013549	chr1:73209040-73408373	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73407600-73407800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr1:73407600-73408400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:73407600-73408400	Enhancers	HUES48 Cell Line	embryonic stem cell

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