Variant report

Variant	rs6670428
Chromosome Location	chr1:73454240-73454241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10493513	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10493514	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11210101	0.90[ASN][1000 genomes]
rs11210103	0.84[EUR][1000 genomes]
rs11210115	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11210117	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11210118	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11210119	0.80[EUR][1000 genomes]
rs11210120	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11210128	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11577664	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12044276	0.85[EUR][1000 genomes]
rs12118981	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12122055	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12136682	0.80[ASN][1000 genomes]
rs12137361	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12137741	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12405997	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12724056	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12745861	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs34477433	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35531383	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4130885	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4233096	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4233101	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4233103	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4263954	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4298682	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4328030	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4344272	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4344273	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4355999	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4409593	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4425940	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4456055	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4469676	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4592217	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4603080	0.82[ASN][1000 genomes]
rs4649972	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4649975	0.80[EUR][1000 genomes]
rs4649976	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4650188	0.82[ASN][1000 genomes]
rs61772284	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61772326	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61772328	0.82[AFR][1000 genomes]
rs6662171	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6682845	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6690119	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7516446	0.83[EUR][1000 genomes]
rs7528197	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7540296	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9645298	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73453200-73456000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:73453600-73454400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:73453600-73455200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:73453600-73455200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:73453800-73456200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:73454000-73455200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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