Variant report

Variant	rs4649976
Chromosome Location	chr1:73533878-73533879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10493513	0.81[ASN][1000 genomes]
rs10493514	0.81[ASN][1000 genomes]
rs10889999	0.88[EUR][1000 genomes]
rs10890012	0.80[EUR][1000 genomes]
rs10890013	0.80[EUR][1000 genomes]
rs10890014	0.80[EUR][1000 genomes]
rs10890015	0.80[EUR][1000 genomes]
rs11210101	0.87[ASN][1000 genomes]
rs11210103	0.83[EUR][1000 genomes]
rs11210114	0.90[EUR][1000 genomes]
rs11210115	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210117	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11210118	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210119	0.93[EUR][1000 genomes]
rs11210120	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11210127	0.84[EUR][1000 genomes]
rs11210128	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11210143	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11210155	0.81[EUR][1000 genomes]
rs11210156	0.81[EUR][1000 genomes]
rs11210157	0.81[EUR][1000 genomes]
rs11210160	0.81[EUR][1000 genomes]
rs11210161	0.81[EUR][1000 genomes]
rs11210162	0.81[EUR][1000 genomes]
rs11210163	0.81[EUR][1000 genomes]
rs11210164	0.81[EUR][1000 genomes]
rs11210165	0.81[EUR][1000 genomes]
rs11210166	0.81[EUR][1000 genomes]
rs11210167	0.82[EUR][1000 genomes]
rs11210168	0.85[EUR][1000 genomes]
rs11577664	0.89[ASN][1000 genomes]
rs11582461	0.85[EUR][1000 genomes]
rs11589897	0.85[EUR][1000 genomes]
rs12033354	0.84[EUR][1000 genomes]
rs12044276	0.81[EUR][1000 genomes]
rs12118981	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12122055	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12122520	0.85[EUR][1000 genomes]
rs12124553	0.84[EUR][1000 genomes]
rs12126688	0.80[EUR][1000 genomes]
rs12128855	0.84[EUR][1000 genomes]
rs12136496	0.85[EUR][1000 genomes]
rs12137361	0.88[ASN][1000 genomes]
rs12137741	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12143587	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12405997	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12724056	0.88[ASN][1000 genomes]
rs12729632	0.92[EUR][1000 genomes]
rs12742692	0.80[EUR][1000 genomes]
rs12745861	0.88[ASN][1000 genomes]
rs12748124	0.92[EUR][1000 genomes]
rs34477433	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34719239	0.80[EUR][1000 genomes]
rs34868208	0.80[EUR][1000 genomes]
rs34956095	0.80[EUR][1000 genomes]
rs35133930	0.81[EUR][1000 genomes]
rs35286654	0.81[EUR][1000 genomes]
rs35446706	0.81[EUR][1000 genomes]
rs35489458	0.81[EUR][1000 genomes]
rs35531383	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36051652	0.80[EUR][1000 genomes]
rs36053729	0.80[EUR][1000 genomes]
rs36093886	0.92[EUR][1000 genomes]
rs4130885	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4233096	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4233101	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4233103	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4263954	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4294371	0.81[EUR][1000 genomes]
rs4298682	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4328030	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4344272	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4344273	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4355999	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4367754	0.81[EUR][1000 genomes]
rs4391625	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4409593	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4425940	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4456055	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4469676	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4477222	0.88[EUR][1000 genomes]
rs4492565	0.85[EUR][1000 genomes]
rs4537504	0.81[EUR][1000 genomes]
rs4559446	0.88[EUR][1000 genomes]
rs4579710	0.81[EUR][1000 genomes]
rs4592217	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4593762	0.85[EUR][1000 genomes]
rs4603080	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4622012	0.88[EUR][1000 genomes]
rs4649972	0.91[ASN][1000 genomes]
rs4649975	0.93[EUR][1000 genomes]
rs4650188	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4650193	0.85[EUR][1000 genomes]
rs4650194	0.84[EUR][1000 genomes]
rs4650195	0.81[EUR][1000 genomes]
rs4650196	0.85[EUR][1000 genomes]
rs4650197	0.80[EUR][1000 genomes]
rs61772284	0.88[ASN][1000 genomes]
rs61772326	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6424508	0.88[EUR][1000 genomes]
rs6657881	0.80[EUR][1000 genomes]
rs6657885	0.80[EUR][1000 genomes]
rs6662171	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6666765	0.81[EUR][1000 genomes]
rs6670428	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6671028	0.81[EUR][1000 genomes]
rs6674333	0.81[EUR][1000 genomes]
rs6674404	0.81[EUR][1000 genomes]
rs6682845	0.88[ASN][1000 genomes]
rs6683380	0.80[EUR][1000 genomes]
rs6684331	0.81[EUR][1000 genomes]
rs6686255	0.81[EUR][1000 genomes]
rs6690119	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6694634	0.81[EUR][1000 genomes]
rs6695455	0.80[EUR][1000 genomes]
rs6695460	0.80[EUR][1000 genomes]
rs6696689	0.83[EUR][1000 genomes]
rs6697098	0.81[EUR][1000 genomes]
rs6698500	0.80[EUR][1000 genomes]
rs6699861	0.84[EUR][1000 genomes]
rs6700625	0.81[EUR][1000 genomes]
rs67437638	0.84[EUR][1000 genomes]
rs7516446	0.84[EUR][1000 genomes]
rs7519995	0.89[EUR][1000 genomes]
rs7525662	0.83[EUR][1000 genomes]
rs7526372	0.89[EUR][1000 genomes]
rs7528197	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528312	0.92[EUR][1000 genomes]
rs7540296	0.89[ASN][1000 genomes]
rs7552256	0.89[EUR][1000 genomes]
rs7554291	0.88[EUR][1000 genomes]
rs9645298	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9919151	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546568	chr1:73529275-73556846	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73531000-73534000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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