Variant report

Variant	rs12748124
Chromosome Location	chr4:153062767-153062768
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10889999	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11210099	0.82[ASN][1000 genomes]
rs11210100	0.83[ASN][1000 genomes]
rs11210103	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11210107	0.93[ASN][1000 genomes]
rs11210114	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11210115	0.92[EUR][1000 genomes]
rs11210117	0.92[EUR][1000 genomes]
rs11210118	0.92[EUR][1000 genomes]
rs11210119	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11210120	0.92[EUR][1000 genomes]
rs11210127	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11210128	0.89[EUR][1000 genomes]
rs11210143	0.83[EUR][1000 genomes]
rs11803263	0.83[ASN][1000 genomes]
rs12025473	0.85[ASN][1000 genomes]
rs12033354	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12042865	0.81[ASN][1000 genomes]
rs12044276	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12118981	0.86[EUR][1000 genomes]
rs12122055	0.91[EUR][1000 genomes]
rs12122377	0.86[ASN][1000 genomes]
rs12137741	0.86[EUR][1000 genomes]
rs12143587	0.83[EUR][1000 genomes]
rs12567284	0.93[ASN][1000 genomes]
rs12724536	0.89[ASN][1000 genomes]
rs12729632	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34477433	0.86[EUR][1000 genomes]
rs36093886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4130885	0.89[EUR][1000 genomes]
rs4233093	0.85[ASN][1000 genomes]
rs4233096	0.84[EUR][1000 genomes]
rs4233101	0.88[EUR][1000 genomes]
rs4233103	0.89[EUR][1000 genomes]
rs4263954	0.89[EUR][1000 genomes]
rs4298682	0.86[EUR][1000 genomes]
rs4344273	0.85[EUR][1000 genomes]
rs4355999	0.89[EUR][1000 genomes]
rs4391625	0.83[EUR][1000 genomes]
rs4425940	0.89[EUR][1000 genomes]
rs4430278	0.82[ASN][1000 genomes]
rs4469676	0.89[EUR][1000 genomes]
rs4477222	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4559446	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4579707	0.84[ASN][1000 genomes]
rs4589057	0.86[ASN][1000 genomes]
rs4592217	0.88[EUR][1000 genomes]
rs4603080	0.87[EUR][1000 genomes]
rs4622012	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4649975	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4649976	0.92[EUR][1000 genomes]
rs4650188	0.90[EUR][1000 genomes]
rs6424507	0.84[ASN][1000 genomes]
rs6424508	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6657069	0.80[ASN][1000 genomes]
rs6662171	0.89[EUR][1000 genomes]
rs6667006	0.84[ASN][1000 genomes]
rs6667756	0.86[ASN][1000 genomes]
rs6672279	0.80[ASN][1000 genomes]
rs66820357	0.89[ASN][1000 genomes]
rs6690119	0.89[EUR][1000 genomes]
rs6693460	0.95[ASN][1000 genomes]
rs6696689	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7516446	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7516673	0.82[ASN][1000 genomes]
rs7519995	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7525662	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7526372	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7528197	0.92[EUR][1000 genomes]
rs7528312	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7528791	0.85[ASN][1000 genomes]
rs7536364	0.84[ASN][1000 genomes]
rs7540420	0.87[ASN][1000 genomes]
rs7552256	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7554291	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9645298	0.88[EUR][1000 genomes]
rs9919151	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9970090	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv880774	chr4:153035743-153121818	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153060400-153064800	Weak transcription	Thymus	Thymus
2	chr4:153062000-153065000	Weak transcription	Dnd41	blood

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