Variant report

Variant	rs6693460
Chromosome Location	chr1:73529275-73529276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10889999	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11210099	0.85[ASN][1000 genomes]
rs11210100	0.85[ASN][1000 genomes]
rs11210103	0.90[ASN][1000 genomes]
rs11210107	0.95[ASN][1000 genomes]
rs11210114	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11210119	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11210127	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11803263	0.86[ASN][1000 genomes]
rs12025473	0.88[ASN][1000 genomes]
rs12033354	0.92[ASN][1000 genomes]
rs12042865	0.84[ASN][1000 genomes]
rs12044276	0.92[ASN][1000 genomes]
rs12122377	0.85[ASN][1000 genomes]
rs12567284	0.95[ASN][1000 genomes]
rs12724536	0.88[ASN][1000 genomes]
rs12729632	0.95[ASN][1000 genomes]
rs12748124	0.95[ASN][1000 genomes]
rs36093886	0.95[ASN][1000 genomes]
rs4233093	0.84[ASN][1000 genomes]
rs4430278	0.81[ASN][1000 genomes]
rs4477222	0.87[ASN][1000 genomes]
rs4559446	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4579707	0.87[ASN][1000 genomes]
rs4589057	0.85[ASN][1000 genomes]
rs4622012	0.88[ASN][1000 genomes]
rs4649975	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6424507	0.87[ASN][1000 genomes]
rs6424508	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6657069	0.83[ASN][1000 genomes]
rs6667006	0.83[ASN][1000 genomes]
rs6667756	0.89[ASN][1000 genomes]
rs66820357	0.92[ASN][1000 genomes]
rs6696689	0.92[ASN][1000 genomes]
rs7516446	0.90[ASN][1000 genomes]
rs7516673	0.85[ASN][1000 genomes]
rs7519995	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7525662	0.97[ASN][1000 genomes]
rs7526372	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7528312	0.97[ASN][1000 genomes]
rs7528791	0.84[ASN][1000 genomes]
rs7536364	0.87[ASN][1000 genomes]
rs7540420	0.86[ASN][1000 genomes]
rs7552256	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7554291	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9919151	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9970090	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546568	chr1:73529275-73556846	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73528400-73532000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:73528600-73531400	Weak transcription	H1 Cell Line	embryonic stem cell

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