Variant report

Variant	rs4622012
Chromosome Location	chr1:73581434-73581435
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:73578582..73580193-chr1:73580747..73583501,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10749815	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889999	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11210103	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11210107	0.85[ASN][1000 genomes]
rs11210114	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11210115	0.88[EUR][1000 genomes]
rs11210117	0.88[EUR][1000 genomes]
rs11210118	0.88[EUR][1000 genomes]
rs11210119	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11210120	0.88[EUR][1000 genomes]
rs11210127	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11210128	0.93[EUR][1000 genomes]
rs11210143	0.87[EUR][1000 genomes]
rs11210166	0.81[EUR][1000 genomes]
rs11210167	0.81[EUR][1000 genomes]
rs11210168	0.84[EUR][1000 genomes]
rs11582461	0.84[EUR][1000 genomes]
rs11589897	0.84[EUR][1000 genomes]
rs12033354	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12044276	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12118981	0.82[EUR][1000 genomes]
rs12122055	0.90[EUR][1000 genomes]
rs12122520	0.84[EUR][1000 genomes]
rs12124553	0.83[EUR][1000 genomes]
rs12128855	0.83[EUR][1000 genomes]
rs12136496	0.84[EUR][1000 genomes]
rs12137741	0.82[EUR][1000 genomes]
rs12143587	0.87[EUR][1000 genomes]
rs12567284	0.85[ASN][1000 genomes]
rs12724536	0.82[ASN][1000 genomes]
rs12729632	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12748124	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34477433	0.82[EUR][1000 genomes]
rs36093886	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4130885	0.93[EUR][1000 genomes]
rs4233101	0.92[EUR][1000 genomes]
rs4233103	0.93[EUR][1000 genomes]
rs4263954	0.93[EUR][1000 genomes]
rs4298682	0.82[EUR][1000 genomes]
rs4344273	0.81[EUR][1000 genomes]
rs4355999	0.93[EUR][1000 genomes]
rs4391625	0.87[EUR][1000 genomes]
rs4425940	0.93[EUR][1000 genomes]
rs4430278	0.89[ASN][1000 genomes]
rs4469676	0.93[EUR][1000 genomes]
rs4477222	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4492565	0.84[EUR][1000 genomes]
rs4559446	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4592217	0.84[EUR][1000 genomes]
rs4593762	0.84[EUR][1000 genomes]
rs4603080	0.91[EUR][1000 genomes]
rs4649975	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4649976	0.88[EUR][1000 genomes]
rs4650188	0.94[EUR][1000 genomes]
rs4650193	0.84[EUR][1000 genomes]
rs4650194	0.83[EUR][1000 genomes]
rs4650196	0.84[EUR][1000 genomes]
rs6424508	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6662171	0.93[EUR][1000 genomes]
rs6672279	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66820357	0.82[ASN][1000 genomes]
rs6690119	0.93[EUR][1000 genomes]
rs6693460	0.88[ASN][1000 genomes]
rs6696689	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6699861	0.83[EUR][1000 genomes]
rs67437638	0.83[EUR][1000 genomes]
rs7516446	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7519995	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7525662	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7526372	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7528197	0.88[EUR][1000 genomes]
rs7528312	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7552256	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7554291	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9645298	0.92[EUR][1000 genomes]
rs9919151	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1010267	chr1:73551169-73628431	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870774	chr1:73560811-73706449	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73580600-73581800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:73581400-73583400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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