Variant report

Variant	rs4559446
Chromosome Location	chr1:73507348-73507349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10889999	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11210099	0.82[ASN][1000 genomes]
rs11210100	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11210103	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11210107	0.93[ASN][1000 genomes]
rs11210114	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11210115	0.88[EUR][1000 genomes]
rs11210117	0.88[EUR][1000 genomes]
rs11210118	0.88[EUR][1000 genomes]
rs11210119	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11210120	0.88[EUR][1000 genomes]
rs11210127	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11210128	0.83[EUR][1000 genomes]
rs11803263	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12025473	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12033354	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12042865	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12044276	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12118981	0.85[EUR][1000 genomes]
rs12122055	0.86[EUR][1000 genomes]
rs12122377	0.83[ASN][1000 genomes]
rs12137741	0.85[EUR][1000 genomes]
rs12567284	0.93[ASN][1000 genomes]
rs12724536	0.85[ASN][1000 genomes]
rs12729632	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12748124	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34477433	0.85[EUR][1000 genomes]
rs36093886	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4130885	0.83[EUR][1000 genomes]
rs4233093	0.82[ASN][1000 genomes]
rs4233096	0.83[EUR][1000 genomes]
rs4233101	0.84[EUR][1000 genomes]
rs4233103	0.83[EUR][1000 genomes]
rs4263954	0.83[EUR][1000 genomes]
rs4298682	0.85[EUR][1000 genomes]
rs4344273	0.85[EUR][1000 genomes]
rs4355999	0.83[EUR][1000 genomes]
rs4425940	0.83[EUR][1000 genomes]
rs4469676	0.83[EUR][1000 genomes]
rs4477222	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4579707	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4589057	0.83[ASN][1000 genomes]
rs4592217	0.88[EUR][1000 genomes]
rs4603080	0.83[EUR][1000 genomes]
rs4622012	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4649975	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4649976	0.88[EUR][1000 genomes]
rs4650188	0.84[EUR][1000 genomes]
rs6424507	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6424508	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6657069	0.80[ASN][1000 genomes]
rs6662171	0.83[EUR][1000 genomes]
rs6667006	0.81[ASN][1000 genomes]
rs6667756	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66820357	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6690119	0.83[EUR][1000 genomes]
rs6693460	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6696689	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7516446	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7516673	0.82[ASN][1000 genomes]
rs7519995	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7525662	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7526372	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7528197	0.88[EUR][1000 genomes]
rs7528312	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7528791	0.82[ASN][1000 genomes]
rs7536364	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7540420	0.83[ASN][1000 genomes]
rs7552256	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7554291	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9645298	0.83[EUR][1000 genomes]
rs9919151	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9970090	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73506600-73507400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:73506800-73507400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:73506800-73507400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:73506800-73508600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:73507000-73507400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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