Variant report

Variant	rs12033354
Chromosome Location	chr1:73573941-73573942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FPGT-9	chr1:73573717-73577148	NONHSAT003927
2	lnc-FPGT-9	chr1:73573717-73577147	ucscGeneNc_uc001dfx_2

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10749815	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10889999	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11210103	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11210107	0.89[ASN][1000 genomes]
rs11210114	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11210115	0.84[EUR][1000 genomes]
rs11210117	0.84[EUR][1000 genomes]
rs11210118	0.84[EUR][1000 genomes]
rs11210119	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11210120	0.84[EUR][1000 genomes]
rs11210127	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11210128	0.89[EUR][1000 genomes]
rs11210143	0.83[EUR][1000 genomes]
rs11210166	0.84[EUR][1000 genomes]
rs11210167	0.83[EUR][1000 genomes]
rs11210168	0.80[EUR][1000 genomes]
rs11582461	0.80[EUR][1000 genomes]
rs11589897	0.80[EUR][1000 genomes]
rs11803263	0.80[ASN][1000 genomes]
rs12025473	0.82[ASN][1000 genomes]
rs12044276	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12122055	0.87[EUR][1000 genomes]
rs12122520	0.80[EUR][1000 genomes]
rs12136496	0.80[EUR][1000 genomes]
rs12143587	0.83[EUR][1000 genomes]
rs12567284	0.89[ASN][1000 genomes]
rs12724536	0.82[ASN][1000 genomes]
rs12729632	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12748124	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1923240	0.84[CEU][hapmap]
rs36093886	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4130885	0.89[EUR][1000 genomes]
rs4233101	0.90[EUR][1000 genomes]
rs4233103	0.89[EUR][1000 genomes]
rs4263954	0.89[EUR][1000 genomes]
rs4355999	0.89[EUR][1000 genomes]
rs4391625	0.83[EUR][1000 genomes]
rs4425940	0.89[EUR][1000 genomes]
rs4430278	0.89[ASN][1000 genomes]
rs4469676	0.89[EUR][1000 genomes]
rs4477222	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4492565	0.80[EUR][1000 genomes]
rs4559446	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4579707	0.81[ASN][1000 genomes]
rs4592217	0.81[EUR][1000 genomes]
rs4593762	0.80[EUR][1000 genomes]
rs4603080	0.89[EUR][1000 genomes]
rs4622012	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4649975	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4649976	0.84[EUR][1000 genomes]
rs4650188	0.90[EUR][1000 genomes]
rs4650193	0.80[EUR][1000 genomes]
rs4650196	0.80[EUR][1000 genomes]
rs6424507	0.81[ASN][1000 genomes]
rs6424508	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6662171	0.89[EUR][1000 genomes]
rs6667756	0.83[ASN][1000 genomes]
rs6672279	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66820357	0.85[ASN][1000 genomes]
rs6690119	0.89[EUR][1000 genomes]
rs6693460	0.92[ASN][1000 genomes]
rs6696689	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516446	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7519995	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7525662	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7526372	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7528197	0.84[EUR][1000 genomes]
rs7528312	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7536364	0.81[ASN][1000 genomes]
rs7540420	0.80[ASN][1000 genomes]
rs7552256	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7554291	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9645298	0.89[EUR][1000 genomes]
rs9919151	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1010267	chr1:73551169-73628431	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870774	chr1:73560811-73706449	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73572000-73580000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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