Variant report

Variant	rs6672279
Chromosome Location	chr1:73626527-73626528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10749815	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10749816	0.89[EUR][1000 genomes]
rs10789358	0.91[EUR][1000 genomes]
rs10789359	0.89[EUR][1000 genomes]
rs10889999	0.80[ASN][1000 genomes]
rs10890011	0.92[EUR][1000 genomes]
rs10890012	0.89[EUR][1000 genomes]
rs10890013	0.89[EUR][1000 genomes]
rs10890014	0.89[EUR][1000 genomes]
rs10890015	0.89[EUR][1000 genomes]
rs10890016	0.91[EUR][1000 genomes]
rs11210114	0.81[EUR][1000 genomes]
rs11210127	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11210143	0.81[EUR][1000 genomes]
rs11210155	0.89[EUR][1000 genomes]
rs11210156	0.89[EUR][1000 genomes]
rs11210157	0.89[EUR][1000 genomes]
rs11210160	0.89[EUR][1000 genomes]
rs11210161	0.89[EUR][1000 genomes]
rs11210162	0.89[EUR][1000 genomes]
rs11210163	0.89[EUR][1000 genomes]
rs11210164	0.89[EUR][1000 genomes]
rs11210165	0.89[EUR][1000 genomes]
rs11210166	0.87[EUR][1000 genomes]
rs11210167	0.87[EUR][1000 genomes]
rs11210168	0.84[EUR][1000 genomes]
rs11210170	0.92[EUR][1000 genomes]
rs11210172	0.88[EUR][1000 genomes]
rs11210174	0.90[EUR][1000 genomes]
rs11582461	0.84[EUR][1000 genomes]
rs11589897	0.84[EUR][1000 genomes]
rs12033354	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12037338	0.92[EUR][1000 genomes]
rs12059553	0.92[EUR][1000 genomes]
rs12087611	0.90[EUR][1000 genomes]
rs12122520	0.84[EUR][1000 genomes]
rs12124553	0.84[EUR][1000 genomes]
rs12126688	0.89[EUR][1000 genomes]
rs12128855	0.84[EUR][1000 genomes]
rs12136496	0.84[EUR][1000 genomes]
rs12137298	0.88[EUR][1000 genomes]
rs12143587	0.81[EUR][1000 genomes]
rs12729632	0.80[ASN][1000 genomes]
rs12742692	0.89[EUR][1000 genomes]
rs12748124	0.80[ASN][1000 genomes]
rs34548060	0.88[EUR][1000 genomes]
rs34719239	0.89[EUR][1000 genomes]
rs34868208	0.89[EUR][1000 genomes]
rs34956095	0.89[EUR][1000 genomes]
rs35133930	0.89[EUR][1000 genomes]
rs35209284	0.88[EUR][1000 genomes]
rs35286654	0.89[EUR][1000 genomes]
rs35350320	0.88[EUR][1000 genomes]
rs35446706	0.89[EUR][1000 genomes]
rs35489458	0.89[EUR][1000 genomes]
rs35578487	0.88[EUR][1000 genomes]
rs36051652	0.89[EUR][1000 genomes]
rs36053729	0.89[EUR][1000 genomes]
rs36093886	0.80[ASN][1000 genomes]
rs4294371	0.89[EUR][1000 genomes]
rs4367754	0.89[EUR][1000 genomes]
rs4391625	0.81[EUR][1000 genomes]
rs4430278	0.93[ASN][1000 genomes]
rs4477222	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4492565	0.84[EUR][1000 genomes]
rs4503305	0.88[EUR][1000 genomes]
rs4537504	0.89[EUR][1000 genomes]
rs4578169	0.87[EUR][1000 genomes]
rs4579710	0.89[EUR][1000 genomes]
rs4592219	0.88[EUR][1000 genomes]
rs4593762	0.84[EUR][1000 genomes]
rs4601539	0.88[EUR][1000 genomes]
rs4607818	0.86[EUR][1000 genomes]
rs4622012	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4641264	0.83[EUR][1000 genomes]
rs4650193	0.84[EUR][1000 genomes]
rs4650194	0.84[EUR][1000 genomes]
rs4650195	0.89[EUR][1000 genomes]
rs4650196	0.84[EUR][1000 genomes]
rs4650197	0.89[EUR][1000 genomes]
rs61765598	0.87[EUR][1000 genomes]
rs6424508	0.80[ASN][1000 genomes]
rs6657881	0.89[EUR][1000 genomes]
rs6657885	0.89[EUR][1000 genomes]
rs6658012	0.88[EUR][1000 genomes]
rs6666765	0.89[EUR][1000 genomes]
rs6671028	0.89[EUR][1000 genomes]
rs6674333	0.89[EUR][1000 genomes]
rs6674404	0.89[EUR][1000 genomes]
rs6683380	0.89[EUR][1000 genomes]
rs6684331	0.89[EUR][1000 genomes]
rs6686255	0.89[EUR][1000 genomes]
rs6694634	0.89[EUR][1000 genomes]
rs6695455	0.89[EUR][1000 genomes]
rs6695460	0.89[EUR][1000 genomes]
rs6696689	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6697098	0.89[EUR][1000 genomes]
rs6698500	0.89[EUR][1000 genomes]
rs6699861	0.85[EUR][1000 genomes]
rs6700625	0.89[EUR][1000 genomes]
rs6703953	0.91[EUR][1000 genomes]
rs67437638	0.83[EUR][1000 genomes]
rs7514409	0.87[EUR][1000 genomes]
rs7519995	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7526372	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7545548	0.87[EUR][1000 genomes]
rs7552256	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9919151	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1010267	chr1:73551169-73628431	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870774	chr1:73560811-73706449	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2757736	chr1:73613099-73775684	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758942	chr1:73613099-73775684	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73626400-73626600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links