Variant report
| Variant | rs4430278 |
|---|---|
| Chromosome Location | chr1:73609642-73609643 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10749815 | 0.89[ASN][1000 genomes] |
| rs10889999 | 0.82[ASN][1000 genomes] |
| rs11210107 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11210114 | 0.80[ASN][1000 genomes] |
| rs11210119 | 0.80[ASN][1000 genomes] |
| rs11210127 | 0.91[ASN][1000 genomes] |
| rs12033354 | 0.89[ASN][1000 genomes] |
| rs12047440 | 0.88[AFR][1000 genomes] |
| rs12567284 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12729632 | 0.82[ASN][1000 genomes] |
| rs12748124 | 0.82[ASN][1000 genomes] |
| rs36093886 | 0.82[ASN][1000 genomes] |
| rs4477222 | 0.88[ASN][1000 genomes] |
| rs4622012 | 0.89[ASN][1000 genomes] |
| rs4649975 | 0.80[ASN][1000 genomes] |
| rs6424508 | 0.82[ASN][1000 genomes] |
| rs6672279 | 0.93[ASN][1000 genomes] |
| rs6693460 | 0.81[ASN][1000 genomes] |
| rs6696689 | 0.89[ASN][1000 genomes] |
| rs7519995 | 0.82[ASN][1000 genomes] |
| rs7525662 | 0.80[ASN][1000 genomes] |
| rs7526372 | 0.82[ASN][1000 genomes] |
| rs7528312 | 0.80[ASN][1000 genomes] |
| rs7552256 | 0.82[ASN][1000 genomes] |
| rs9919151 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005356 | chr1:73542786-74124065 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010267 | chr1:73551169-73628431 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv870774 | chr1:73560811-73706449 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv3372062 | chr1:73603980-73620807 | Enhancers Flanking Active TSS | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:73609200-73610000 | Enhancers | Fetal Heart | heart |
